Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_024894.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq16 82.4 1e-12 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 1e-12 Identities = 162/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1702 CTTTAATCATGACCGGCTTTCCGTACTTGGTATTGCTTTGCCAGTCACGCTGGGCCCCCA 1761 |||| ||| ||||| |||| ||||||| || ||||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1762 TGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTA--CCA 1819 ||||| || |||| |||| | | || || | ||||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1820 GGCATCATTGCTATACACCTTTGGGCTCAAATCAAGATGTCCACACAAGTAATTGTGGGG 1879 |||| || | ||| | || |||| || | || |||| || ||||| || Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1880 TCCTAAACAACGAGCCCACATTGTTTTGCCCGTTCTACTATCACCCTCTATGACTATT 1937 ||| || | | ||||||||||| || || ||||| |||||| || || | |||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649459573744