Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_025265.1
Length=2564
Score E
Sequences producing significant alignments: (Bits) Value
seq16 159 6e-36
seq13 141 2e-30
seq11 129 9e-27
>seq16
Length=188620566
Score = 159 bits (176), Expect = 6e-36
Identities = 238/336 (71%), Gaps = 10/336 (3%)
Strand=Plus/Minus
Query 1539 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCACGTTGGGACCCAA 1598
|||| || ||||| || |||| ||| || || || ||||||||| | ||| | ||||
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1599 TTAGCTCTTTCCAGTGTTTCATTTTTAGGTATTGCGGAGTGACATCATCAATGACGTTAT 1658
|| || ||||||||||| || |||| || | || | |||||| |||||||
Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220
Query 1659 ATTCCACTTCATTTGAATAAACTTTAGAATTAAAGTGTAGATGTCCACTCAAGTAATTAT 1718
||||||| || || || |||| ||| ||| |||| || || ||||| || |||||||
Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160
Query 1719 GTGAACCTAATGCACGGGCCCACCTCGTCTTCCCCGTCCTTGAATCACCCTCAATGATTA 1778
|| || |||| | |||||| | ||||| || || ||||||||||| ||||| ||||
Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100
Query 1779 T--ACTAATAGGTCTCTCTGGCCGCGCAGCGGCACCCCTTCCGAAATATTCATCAGCCCA 1836
| ||| ||||||| ||| || | |||| | | ||||| ||||| |||||
Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042
Query 1837 CTCTTGCATCTCGTCAGGCACGTTAGTGAAAGATGA 1872
| |||||| | | || ||||| |||||||| ||
Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006
>seq13
Length=197258317
Score = 141 bits (156), Expect = 2e-30
Identities = 322/478 (67%), Gaps = 18/478 (4%)
Strand=Plus/Plus
Query 1415 AGGAAGATGAATTTAGCATTATGAAGTGTCCACGCTTTTAGAGATGAATTTTCATGCTT- 1473
||||||||||| ||||||| | || |||||| ||| ||| || | |||| ||
Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAGA-CCCAACATGCATGGTTT 89851169
Query 1474 -GTCAAG-GAACTCTTTATAACTAGCCCCCTCTCSTGGATTGCAAAGCACGATTGATGGG 1531
||||| || | | ||| | | || ||| ||| ||||| || | ||||| |||
Sbjct 89851170 GTTCAAGTGATCCCAATATGA--AAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGT 89851227
Query 1532 ATTCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCACGTTGG 1591
|| |||||||| | || |||||| ||||||| ||||| ||||| | ||||
Sbjct 89851228 ATGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGA 89851287
Query 1592 GACCCAATTAGCTCTTTCCAGTGTTTCATTTTTAGGTATTGCGGAGTGACATCATCAATG 1651
| ||||| | |||||||||||| || | |||||| || | | ||||| |||
Sbjct 89851288 GCTCCAATAAACTCTTTCCAGTG------CTTGAAGTATTGTGGTGGTATGTCATCGATG 89851341
Query 1652 ACGTTATATTCCACTTCATTTGAATAAAC--TTTAGAATTAAAGTGTAGATGTCCACTCA 1709
| ||| || || || || ||||| | || ||| || | || | ||| |||| |
Sbjct 89851342 ATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACATA 89851401
Query 1710 AGTAATTATGTGAACCTAATGCACGGGCCCACCTCGTCTTCCCCGTCCTTGAATCACCCT 1769
||| |||||| || || | | |||||| | || || || ||||| ||||||| |
Sbjct 89851402 CGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACTTT 89851461
Query 1770 CAATGATTAT--ACTAATAGGTCTCTCTGGCCGCGCAGCGGCACCCCTTCCGAAATATTC 1827
| |||||||| ||| | |||||| |||||||||||||| ||| || |||
Sbjct 89851462 CTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGA 89851519
Query 1828 ATCAGCCCACTCTTGCATCTCGTCAGGCACGTTAGTGAAAGATGAGAGTGGAAACGGA 1885
||| ||||| | ||||| || || || || |||||||| ||| | ||| || |||
Sbjct 89851520 ATCTGCCCATTATTGCAGGTCTTCTGGTACATTAGTGAAGCTTGATAATGGGAATGGA 89851577
>seq11
Length=168460249
Score = 129 bits (142), Expect = 9e-27
Identities = 269/398 (68%), Gaps = 10/398 (3%)
Strand=Plus/Minus
Query 1499 CCCTCTCSTGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTT 1558
||| ||| ||| ||||| |||| ||||| ||| || |||||||| | || ||||||
Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550
Query 1559 CCGTATTTACAGTTGCTTTGCCAGTCACGTTGGGACCCAATTAGCTCTTTCCAGTGTTTC 1618
|||||||| |||| ||||| | ||||| | ||||| | |||||||||||| |
Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---C 165527493
Query 1619 ATTTTTAGGTATTGCGGAGTGACATCATCAATGACGTTATATTCCACTTCATTTGAATAA 1678
| | | |||||| || | | ||||| |||| ||| || || | | ||||| |
Sbjct 165527492 A---TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436
Query 1679 ACTTTAGAATTAAAGTGTAGATGTCCACTCAAGTAATTATGTGAACCTAATGCACGGGCC 1738
||||| || || | ||| |||| | ||| |||||| || || | | |||
Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376
Query 1739 CACCTCGTCTTCCCCGTCCTTGAATCACCCTCAATGATTAT--ACTAATAGGTCTCTCTG 1796
||| | || || | ||||| |||| ||| | |||||| | ||| | |||||| |
Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318
Query 1797 GCCGCGCAGCGGCACCCCTTCCGAAATATTCATCAGCCCACTCTTGCATCTCGTCAGGCA 1856
||||||||||||| || || ||| ||| ||||| ||||||| || || || |
Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258
Query 1857 CGTTAGTGAAAGATGAGAGTGGAAACGGAGGAACCCAT 1894
| |||||||| ||| | || || ||| ||||||
Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCAT 165527220
Lambda K H
0.635 0.408 0.914
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8095868561440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |