Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_025265.1 Length=2564 Score E Sequences producing significant alignments: (Bits) Value seq16 159 6e-36 seq13 141 2e-30 seq11 129 9e-27 >seq16 Length=188620566 Score = 159 bits (176), Expect = 6e-36 Identities = 238/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1539 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCACGTTGGGACCCAA 1598 |||| || ||||| || |||| ||| || || || ||||||||| | ||| | |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1599 TTAGCTCTTTCCAGTGTTTCATTTTTAGGTATTGCGGAGTGACATCATCAATGACGTTAT 1658 || || ||||||||||| || |||| || | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1659 ATTCCACTTCATTTGAATAAACTTTAGAATTAAAGTGTAGATGTCCACTCAAGTAATTAT 1718 ||||||| || || || |||| ||| ||| |||| || || ||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1719 GTGAACCTAATGCACGGGCCCACCTCGTCTTCCCCGTCCTTGAATCACCCTCAATGATTA 1778 || || |||| | |||||| | ||||| || || ||||||||||| ||||| |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1779 T--ACTAATAGGTCTCTCTGGCCGCGCAGCGGCACCCCTTCCGAAATATTCATCAGCCCA 1836 | ||| ||||||| ||| || | |||| | | ||||| ||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1837 CTCTTGCATCTCGTCAGGCACGTTAGTGAAAGATGA 1872 | |||||| | | || ||||| |||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 141 bits (156), Expect = 2e-30 Identities = 322/478 (67%), Gaps = 18/478 (4%) Strand=Plus/Plus Query 1415 AGGAAGATGAATTTAGCATTATGAAGTGTCCACGCTTTTAGAGATGAATTTTCATGCTT- 1473 ||||||||||| ||||||| | || |||||| ||| ||| || | |||| || Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAGA-CCCAACATGCATGGTTT 89851169 Query 1474 -GTCAAG-GAACTCTTTATAACTAGCCCCCTCTCSTGGATTGCAAAGCACGATTGATGGG 1531 ||||| || | | ||| | | || ||| ||| ||||| || | ||||| ||| Sbjct 89851170 GTTCAAGTGATCCCAATATGA--AAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGT 89851227 Query 1532 ATTCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCACGTTGG 1591 || |||||||| | || |||||| ||||||| ||||| ||||| | |||| Sbjct 89851228 ATGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGA 89851287 Query 1592 GACCCAATTAGCTCTTTCCAGTGTTTCATTTTTAGGTATTGCGGAGTGACATCATCAATG 1651 | ||||| | |||||||||||| || | |||||| || | | ||||| ||| Sbjct 89851288 GCTCCAATAAACTCTTTCCAGTG------CTTGAAGTATTGTGGTGGTATGTCATCGATG 89851341 Query 1652 ACGTTATATTCCACTTCATTTGAATAAAC--TTTAGAATTAAAGTGTAGATGTCCACTCA 1709 | ||| || || || || ||||| | || ||| || | || | ||| |||| | Sbjct 89851342 ATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACATA 89851401 Query 1710 AGTAATTATGTGAACCTAATGCACGGGCCCACCTCGTCTTCCCCGTCCTTGAATCACCCT 1769 ||| |||||| || || | | |||||| | || || || ||||| ||||||| | Sbjct 89851402 CGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACTTT 89851461 Query 1770 CAATGATTAT--ACTAATAGGTCTCTCTGGCCGCGCAGCGGCACCCCTTCCGAAATATTC 1827 | |||||||| ||| | |||||| |||||||||||||| ||| || ||| Sbjct 89851462 CTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGA 89851519 Query 1828 ATCAGCCCACTCTTGCATCTCGTCAGGCACGTTAGTGAAAGATGAGAGTGGAAACGGA 1885 ||| ||||| | ||||| || || || || |||||||| ||| | ||| || ||| Sbjct 89851520 ATCTGCCCATTATTGCAGGTCTTCTGGTACATTAGTGAAGCTTGATAATGGGAATGGA 89851577 >seq11 Length=168460249 Score = 129 bits (142), Expect = 9e-27 Identities = 269/398 (68%), Gaps = 10/398 (3%) Strand=Plus/Minus Query 1499 CCCTCTCSTGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTT 1558 ||| ||| ||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1559 CCGTATTTACAGTTGCTTTGCCAGTCACGTTGGGACCCAATTAGCTCTTTCCAGTGTTTC 1618 |||||||| |||| ||||| | ||||| | ||||| | |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---C 165527493 Query 1619 ATTTTTAGGTATTGCGGAGTGACATCATCAATGACGTTATATTCCACTTCATTTGAATAA 1678 | | | |||||| || | | ||||| |||| ||| || || | | ||||| | Sbjct 165527492 A---TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1679 ACTTTAGAATTAAAGTGTAGATGTCCACTCAAGTAATTATGTGAACCTAATGCACGGGCC 1738 ||||| || || | ||| |||| | ||| |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1739 CACCTCGTCTTCCCCGTCCTTGAATCACCCTCAATGATTAT--ACTAATAGGTCTCTCTG 1796 ||| | || || | ||||| |||| ||| | |||||| | ||| | |||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1797 GCCGCGCAGCGGCACCCCTTCCGAAATATTCATCAGCCCACTCTTGCATCTCGTCAGGCA 1856 ||||||||||||| || || ||| ||| ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1857 CGTTAGTGAAAGATGAGAGTGGAAACGGAGGAACCCAT 1894 | |||||||| ||| | || || ||| |||||| Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCAT 165527220 Lambda K H 0.635 0.408 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8095868561440