Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_025680.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-24 seq13 96.9 6e-17 seq11 89.7 9e-15 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 187/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1728 CTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCA 1787 |||| || |||| || || | |||||| || ||||||||| || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1788 TGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACG 1847 |||||||| |||| |||||| | || |||| |||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1848 CATCATTACTGTACACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGC 1907 |||| ||| | | ||| | || | | ||||| || |||| ||||||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1908 CTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTACTATCACCTTCAATGACAAT--ACC 1965 | | || || ||||||||||| || || ||||| |||||||||||| | || || Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1966 TATGGGTCTCCATGGCCGCGCAGCG 1990 | |||||| |||| || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 206/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1693 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTA 1752 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1753 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1812 || ||| ||||| | || || || || || || || ||||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1813 ATGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCATCATTACTGTACACCTTTGGG 1870 || || || |||||| |||| |||||| | ||| || || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1871 -CTT-AGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTG 1928 ||| ||||| | ||| ||||||| || |||||| || | ||| || |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1929 TTTTGCCTGTTCTACTATCACCTTCAATGACAATACCTATGGGTCTCCATGGCCGCGCAG 1988 |||| ||||| || ||||| ||| |||| || | |||||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 1989 CGG 1991 ||| Sbjct 89851498 CGG 89851500 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 199/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1693 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTA 1752 |||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1753 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1812 || || ||||| | | || || || || || || || ||||| | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1813 ATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCT 1872 || || || |||||| |||| |||||| || | || | | || ||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1873 TAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTT 1932 |||| | ||| ||||||| || |||||| || | ||| || |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1933 GCCTGTTCTACTATCACCTTCAATGACAATACCTATGGGTCTCCATGGCCGCGCAGCGG 1991 || ||| || || ||||| |||| | | |||||| ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732658222992