Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_025725.1 Length=2735 Score E Sequences producing significant alignments: (Bits) Value seq13 104 4e-19 seq11 93.3 7e-16 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 204/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1686 CCAGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTAT 1745 || || ||||| || | ||| || ||||| || ||||| | || ||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1746 TTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTGAAGTGCTTTAGGTAG 1805 ||| ||| ||||| | || || || || ||||| || ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1806 TGGGGATCTACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAGACCCTAGGAC-- 1863 || || || |||||| |||| |||||| ||||||| | |||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1864 TCAAGTCCAGATGGCCACATAGGTAGTTATGTGGACCCAATGACCTAGCCCACATCGTCT 1923 | | ||||| ||| ||||||| |||||||||| ||||| || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1924 TCCCCGTCCGACTATCGCCCTCTATGACTATACTATTAGGTCTGAAAGGCCGCGCAGCTG 1983 | || |||| ||| | ||||||| ||| || ||||| | ||||||||||| | Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1984 C 1984 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1686 CCAGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTAT 1745 || || ||||| || | ||| || ||||| || ||||| | || ||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1746 TTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTGAAGTGCTTTAGGTAG 1805 ||| || ||||| | | || || || || ||||| || ||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1806 TGGGGATCTACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAGACCCTAGGACTC 1865 || || || |||||| |||| |||||| |||| ||| | |||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1866 AAGTCCAGATGGCCACATAGGTAGTTATGTGGACCCAATGACCTAGCCCACATCGTCTTC 1925 ||||| ||| ||||||| |||||||||| ||||| || || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1926 CCCGTCCGACTATCGCCCTCTATGACTATACTATTAGGTCTGAAAGGCCGCGCAGCTGC 1984 | |||| || || | ||||| | | || ||||| | ||||||||||| || Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8643059677648