Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_026253.1 Length=2661 Score E Sequences producing significant alignments: (Bits) Value seq16 147 4e-32 seq13 118 2e-23 seq11 111 3e-21 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 252/362 (70%), Gaps = 14/362 (4%) Strand=Plus/Minus Query 1642 CTTTAATTTGAACAGGCTTGCCGTATTTACAATTTGACTGCCAGTCCTTTTGGGCCCCAA 1701 |||| || ||||| || || | ||| || || |||| |||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1702 TCAATTCCTTCCAATGCTTTAGCTTTAGGTATTGGGGACTGACGTCATCGATGACGTTAT 1761 ||||||||||| || |||| |||| || | |||| ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAAC------ATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1762 GCTCCACATCGTTGGAGTAGACCCGGGAATTGAAGTCCAGATGGCCACTCAAGTAATTAT 1821 ||||||||||| ||| | ||| | ||| ||||| | || ||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1822 GTGGGCCTAAAGCACGAGCCCACATCGTCTTGCCAGTTCTTGAACCACCTTCAACTATCA 1881 || || || | | |||||||| ||||| || ||||||||| ||||||||| ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1882 --AACTTATGGGCCTCTCTGGCCGCGCAGCGGAACCCCTCCCAAAATAATCGTCAGCCCA 1939 ||| | || ||| ||| || | |||| | ||||||||| || ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1940 CTCTTGCAT--CTGGTTGGGCACGTTAGTGAATGAGGAAAGGGGAAATGGAGGGGCCCAT 1997 | |||||| || || || ||||| ||||| || || | || ||||| ||||| Sbjct 2249041 TTTTTGCATAACTTGT--GGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCAT 2248984 Query 1998 GG 1999 || Sbjct 2248983 GG 2248982 >seq13 Length=197258317 Score = 118 bits (130), Expect = 2e-23 Identities = 309/465 (66%), Gaps = 20/465 (4%) Strand=Plus/Plus Query 1606 CTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGT 1665 |||| || ||||| || | ||||| ||| || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1666 ATTTACAATTTGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAATGCTTTAGCT 1725 |||| || || |||||||| | | ||| || ||||| || || ||||| ||||| | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA-- 89851316 Query 1726 TTAGGTATTGGGGACTGACGTCATCGATGACGTTATGCTCCACATCGTTGGAGTAGAC-- 1783 |||||| || | ||||||||||| ||| | || || ||||| ||| |||| Sbjct 89851317 ----GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1784 CCGGGAATTGAAGTCCAGATGGCCACTCAAGTAATTATGTGGGCCTAAAGCACGAGCCCA 1843 |||| ||||| ||| |||| | ||| |||||| || |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1844 CATCGTCTTGCCAGTTCTTGAACCACCTTCAACTATCA--AACTTATGGGCCTCTCTGGC 1901 ||| || || || || || ||| ||| ||| | || | ||| | || ||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1902 CGCGCAGCGGAACCCCTCCCAAAATAATCGTCAGCCCACTCTTGCATCTGGTTGGGCACG 1961 |||||||||| ||||| || || ||||| | ||||| | | || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1962 TTAGTGAATGAGGAAAGGGGAAATGGAGGGGCCCATG--GCTCTGGAGGCTTGATGAAAA 2019 |||||||| || | || |||||| || ||| ||| | | | ||||| | | Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGACTTACCTATGGAGCTATAGGGAGTTGAT--AGA 89851608 Query 2020 TCCTGTCCAGGT--TACTTGATAGGTTGTGATACTGGAAAAGAAA 2062 || ||||||| || ||||| |||||||| ||| || ||||| Sbjct 89851609 CTCTATCCAGGTTGTAGTTGAT--GTTGTGATGCTGTAACAGAAA 89851651 >seq11 Length=168460249 Score = 111 bits (122), Expect = 3e-21 Identities = 308/467 (66%), Gaps = 18/467 (4%) Strand=Plus/Minus Query 1602 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTG 1661 ||| |||| || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1662 CCGTATTTACAATTTGACTGCCAGTCCTTTTGGGCCCCAATCAATTCCTTCCAATGCTTT 1721 |||||||| || | |||||||| | ||| || ||||| || || ||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1722 AGCTTTAGGTATTGGGGACTGACGTCATCGATGACGTTATGCTCCACATCGTTGGAGTAG 1781 || | | |||||| || | ||||||||||| ||| | || | | ||| ||| || Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1782 ACCCGGGAATTGAAGTCCAGATGGCCACTCAAGTAATTATGTGGGCCTAAAGCACGAGCC 1841 || ||| ||||| ||| |||| | ||| |||||| || |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1842 CACATCGTCTTGCCAGTTCTTGAACCACCTTCAACTAT--CAAACTTATGGGCCTCTCTG 1899 ||||| || |||| || || ||| ||||| | || ||| | || ||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1900 GCCGCGCAGCGGAACCCCTCCCAAAATAATCGTCAGCCCACTCTTGCATCTGGTTGGGCA 1959 |||||||||||| ||||| || || ||||| ||||||| | | || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1960 CGTTAGTGAATGAGGAAAGGGGAAATGGAGGGGCCCATGGCTCTGGAGG--CTTGATGAA 2017 | |||||||| || | || |||||| ||||||| ||| ||| || || | Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCAT--A 165527200 Query 2018 AATCCTGTCCAGGT--TACTTGATAGGTTGTGATACTGGAAAAGAAA 2062 | || ||||||| || ||||| |||||||| ||| || ||||| Sbjct 165527199 GACTCTATCCAGGTTGTAGTTGAT--GTTGTGATGCTGTAACAGAAA 165527155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8406263522096