Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_026763.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq16 82.4 1e-12 seq13 80.6 5e-12 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 1e-12 Identities = 183/268 (68%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1721 CTTTAATTTGAATTGGTTTCCCGTATTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1779 |||| || |||| ||||| | ||| || | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1780 ATGAATTCTTTGAAATGTTTCAGATAGTGGGGGTCGACGTCATCTATGACGTTATA--CC 1837 | ||||| || | ||||| | | | || |||| |||| ||| || |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1838 ATGCGTCGTTGCTGTAGATCTTTGGGCTTAGATCTAGATGTCCGCACAAATAATTATGTG 1897 | | ||||| | | | | | || | | |||| || || | |||||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1898 GGCCTAATGATCGAGCCCACATAGTTTTCCCTGTTCTACTCGCACCCTCTATCACTAT-- 1955 || ||||||| |||||||| || || || ||||| |||| || || | ||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1956 ACTCACGGGTCTCCAGGGCCGCGCAGCG 1983 ||| | |||||| | || || | |||| Sbjct 2249096 ACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 80.6 bits (88), Expect = 5e-12 Identities = 203/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1686 TCCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTTTAATTTGAATTGGTTTCCCGTA 1745 |||||| ||||||| | |||||| || || || ||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1746 TTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATA 1805 ||| ||| ||||| | ||| || || || || ||||| | || || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1806 --GTGGGGGTCGACGTCATCTATGACGTTATACCATGCGTCGTTGCTGTAGA-TCTTTGG 1862 |||| ||| | |||||| |||| ||| || ||||||| | ||| | ||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1863 GCTT-AGATCTAGATGTCCGCACAAATAATTATGTGGGCCTAATGATCGAGCCCACATAG 1921 ||| || || | ||| || || | || |||||| || || |||| |||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1922 TTTTCCCTGTTCTACTCGCACCCTCTATCACTATACTCACGGGTCTCCAGGGCCGCGCAG 1981 |||| ||||| || ||| ||||| | ||| | |||||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 1982 CGGC 1985 |||| Sbjct 89851498 CGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649459573744