Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_027129.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq13 120 5e-24 seq11 111 3e-21 >seq13 Length=197258317 Score = 120 bits (132), Expect = 5e-24 Identities = 213/305 (70%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1687 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTA 1746 |||||| ||||| || | ||| || || ||||| ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1747 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGT 1805 |||| | || || ||||| | ||| || || || |||||||| ||||||| | || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1806 AGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGTAGACCTTGGGAC 1865 | || || | |||||| |||| |||||| | || || | |||| || Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1866 --TGAGGTCCAGATGACCACATAGATAATTATGTGGTCCCAATGCACGCGCCCACATCGT 1923 ||||||||| ||||||||||| || |||||| |||||| | | |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1924 CTTCCCCGTCCTACTATCACCCTCTATGACAAT--ACTTATGGGTCGCAAAGGCCGCGCA 1981 || || ||||| ||||| ||||||| || ||| | |||| || ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCA 89851496 Query 1982 GCGGC 1986 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 111 bits (122), Expect = 3e-21 Identities = 209/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 1687 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTA 1746 |||||| ||||| || | ||| || || ||||| ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1747 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGT 1805 |||| | | || ||||| | | ||| || || || |||||||| ||||| | | || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1806 AGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGTAGACCTTGGGAC 1865 | || || | |||||| |||| |||||| || | || | |||| || Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1866 TGAGGTCCAGATGACCACATAGATAATTATGTGGTCCCAATGCACGCGCCCACATCGTCT 1925 || |||||| ||||||||||| || |||||| |||||| | | |||||||| || | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1926 TCCCCGTCCTACTATCACCCTCTATGACAAT--ACTTATGGGTCGCAAAGGCCGCGCAGC 1983 | | ||||| || ||| | ||||| | ||| | |||| || ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGC 165527308 Query 1984 GGC 1986 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662259365936