Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_027215.1 Length=2796 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-24 seq13 100 5e-18 seq11 87.8 3e-14 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 187/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 1739 CTTTAATTTGAATGGGTTTCCCGTATTTTGTGTT-GCTCTGCCAGTCCCTTTGGGCCCCC 1797 |||| || |||| ||||| | ||| || || ||| |||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCT-TGCCAGTCTCTTTGTGCACCA 2249275 Query 1798 ATGAATTCTTTAAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCAC 1857 | ||||| || |||| |||||| | || |||| |||| |||||| ||||| || | Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1858 GCATCATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGA 1917 |||| || || || | | |||| | | || | || |||| |||||||| ||| Sbjct 2249214 ACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTT 2249155 Query 1918 CCTAACGATCGTGCCCACATTGTTTTTCCGGTACGACTATCACCTTCGATTACAATACTA 1977 || || |||| |||||||||||| |||||||| | ||||||||| |||| || Sbjct 2249154 CCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGAC 2249095 Query 1978 TCAGGTCTCCATGGCCGCGCAGCG 2001 | ||||||| |||| || | |||| Sbjct 2249094 TGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 208/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1704 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTA 1763 |||||| ||||| || | ||| || || || || ||||| | || | || || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1764 TTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAATA 1823 ||| ||| |||||| | ||| || || || || ||||| ||||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1824 ATGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCATCATTTGAAAATA--TCTTAG 1879 || || || |||||| |||| |||||| | ||| || ||||| || | | || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1880 GGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATTG 1939 |||| || | ||| ||||| | || || ||| || || |||| ||||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1940 TTTTTCCGGTACGACTATCACCTTCGATTACAAT--ACTATCAGGTCTCCATGGCCGCGC 1997 |||| || || | ||||| ||| || | || ||| | |||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1998 AGCGG 2002 ||||| Sbjct 89851496 AGCGG 89851500 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 201/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1704 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTA 1763 |||||| ||||| || | ||| || || || || ||||| | || | || || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1764 TTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAATA 1823 ||| || |||||| | | ||| || || || || ||||| ||||| | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1824 ATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTAGGGCT 1883 || || || |||||| |||| |||||| || | ||||| || | || | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1884 GAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATTGTTTT 1943 | | || | ||| ||||| | || || ||| || || |||| ||||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1944 TCCGGTACGACTATCACCTTCGATTACAAT--ACTATCAGGTCTCCATGGCCGCGCAGCG 2001 | || | || ||||| || | | ||| | |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 2002 G 2002 | Sbjct 165527306 G 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8835052341720