Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028046.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq16 132 8e-28 seq13 109 1e-20 seq11 109 1e-20 >seq16 Length=188620566 Score = 132 bits (146), Expect = 8e-28 Identities = 192/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1731 CTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCA 1790 |||| || ||||| || |||| ||| || |||| ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1791 TGAATTCTTTAAAGTGTTTTAGATAATGCGGATCAACGTCATCAATGACGTTATA--CCA 1848 ||||| || ||||||||| | | || || | ||||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1849 AGCATCATTGCTGTACACTTTAGGGCTGAGGTCTAAGTGACCACATAGGTAGTTATGTGG 1908 |||| || | | || |||| | | |||||| | ||||| || || |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1909 ACCCAAAGACCTAGCCCACATGGTCTTGCCAGTCCTACTATCACCCTCAATCACAAT--A 1966 ||||| || || |||||||| ||||| || || || |||||| ||||| | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1967 CTCATGGGTCTCAAAGGCCGCGCAGCG 1993 || | |||||||| || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 109 bits (120), Expect = 1e-20 Identities = 206/302 (68%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 1696 TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1755 |||||| ||||| || | ||| | || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1756 TTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATA 1815 ||| || || ||||| | | ||| || || || || ||||| |||| || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1816 ATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTAGGGC- 1874 || || | |||||| |||| ||| || | | || || | | ||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1875 -TGAGGTCTAAGTGACCACATAGGTAGTTATGTGGACCCAAAGACCTAGCCCACATGGTC 1933 ||||||| | |||||||||| |||||||||| |||||||| || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1934 TTGCCAGTCCTACTATCACCCTCAATCACAATACTCATGGGTCTCAAAGGCCGCGCAGCG 1993 || || ||||| ||||| || || | || | | ||||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1994 GC 1995 || Sbjct 89851500 GC 89851501 >seq11 Length=168460249 Score = 109 bits (120), Expect = 1e-20 Identities = 204/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1696 TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1755 |||||| ||||| || | ||| | || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1756 TTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATA 1815 ||| | || ||||| | || ||| || || || || ||||| |||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1816 ATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTAGGGCT 1875 || || | |||||| |||| ||| || ||| | || | | ||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1876 GAGGTCTAAGTGACCACATAGGTAGTTATGTGGACCCAAAGACCTAGCCCACATGGTCTT 1935 | |||| | |||||||||| |||||||||| |||||||| || |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1936 GCCAGTCCTACTATCACCCTCAATCACAATACTCATGGGTCTCAAAGGCCGCGCAGCGGC 1995 || ||||| || ||| | || | | | | ||||||| |||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671859210080