Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028114.1 Length=2765 Score E Sequences producing significant alignments: (Bits) Value seq16 104 4e-19 >seq16 Length=188620566 Score = 104 bits (114), Expect = 4e-19 Identities = 184/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1727 CTTTAATTTGAATTGGCTTCCCGTACTTTGTA--TTGCTTTGCCAGTCCCTTTGGGCCCC 1784 |||| || |||| || || | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTT-GCACTTTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1785 CATGAATTCTTTAAAGTGCTTCAGATAATGCGGATCTACGTCATCAATGACGTTGTACCA 1844 | ||||| || |||| || | | | || || | |||| |||||| ||||| || Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1845 CGCATCATTGCTGTACACCTTGGGGCTCAGGTCAAGATGACCGCACAGATAATTGTGAGG 1904 | |||| || | | ||| | || ||| ||| | || ||| | | |||||| || Sbjct 2249215 CACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1905 TCCTAATGATCTGGCCCACATTGTTTTGCCGGTACGACTATCACCCTCAATTACTATACT 1964 ||| |||||||| ||||||||||| || ||||| | |||||| ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1965 ATTCGGCCTCCATGGCCGCGCAGCG 1989 | || ||| |||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8735853999600