Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028140.1 Length=2624 Score E Sequences producing significant alignments: (Bits) Value seq11 140 5e-30 seq13 129 1e-26 seq16 105 1e-19 >seq11 Length=168460249 Score = 140 bits (154), Expect = 5e-30 Identities = 257/374 (69%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 1557 CCCTCGCCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTT 1616 ||| | ||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1617 CCATATTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTC 1676 || ||||| |||| ||||| | ||||| || ||||| | ||||||||| || | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1677 ATCTTTTTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAG 1736 | | || | || || || |||||||||| |||||| | || | ||||||| || Sbjct 165527489 AAGTATT---GTGGTGGTATG---TCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1737 ACTCTTGGGTTGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCC 1796 ||| || |||| ||||| ||| || | || || |||||| ||||| | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1797 CACATCGTCTTCCCCGTCCGACTATCACCTTCAACTATGAT-----ACTAATAGGTCTGT 1851 ||||| || || | |||| || ||||| |||||| ||| | ||||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCTCA 165527321 Query 1852 CAGGCCGCGCAGCGGGATCAACACCGAAATAACTGTCCGCCCACTCTTGCATCTCGTCTG 1911 ||||||||||||| | | ||| || || || ||||| ||||||| || |||| Sbjct 165527320 TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 1912 GCACGTTAGTGAAG 1925 | || ||||||||| Sbjct 165527260 GTACATTAGTGAAG 165527247 >seq13 Length=197258317 Score = 129 bits (142), Expect = 1e-26 Identities = 262/385 (68%), Gaps = 12/385 (3%) Strand=Plus/Plus Query 1563 CCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATAT 1622 ||||| ||||| || | ||||| ||| || |||||||| | || |||||| | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1623 TTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTTT 1682 || ||||| ||||| | |||| || ||||| | ||||||||| || || | | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1683 TTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCTT 1742 | | || || || |||||||||| |||||| | | ||||||||| ||||| || Sbjct 89851321 T---GTGGTGGTATG---TCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1743 GGGT--TGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCACA 1800 | ||| ||||| ||| || | || || |||||| ||||| | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1801 TCGTCTTCCCCGTCCGACTATCACCTTCAACTATGAT--ACTAATAGGTCTGTCAGGCCG 1858 | || || || |||| ||||| ||| | || || ||| | ||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1859 CGCAGCGGGATCAACACCGAAATAACTGTCCGCCCACTCTTGCATCTCGTCTGGCACGTT 1918 |||||||| | | || || || || ||||| | ||||| || ||||| || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1919 AGTGAAGGAGGAGAGTGGAAACGGA 1943 ||||||| || | ||| || ||| Sbjct 89851553 AGTGAAGCTTGATAATGGGAATGGA 89851577 Score = 91.5 bits (100), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 1700 GTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCTTGGGTTGAAGTCCAGATG 1759 ||||||||||| |||||| | || | ||||||| ||||| || ||||| ||||| || Sbjct 172133905 GTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCA-ATT 172133963 Query 1760 CCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCACATCGTCTTCCCCGTCCGACT 1819 || | || || |||||| |||| | | |||||||| || || || || | Sbjct 172133964 GCCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGA 172134023 Query 1820 ATCACCTTCAACTATGA-TACTAA--TAGGTCTGTCAGGCCGCGCAGCGGGATCAACACC 1876 || ||||| |||||| |||| | | ||||| | ||||| ||||||| | | ||| Sbjct 172134024 ATTACCTT---CTATGATTACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTTGTATACC 172134080 Query 1877 GAAATAACTGTCCGCCCACTCTTGCATCTCGTCTGGCACGTTAGTGAAG 1925 || || || ||||| ||||||| || ||| | || ||||||||| Sbjct 172134081 AAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAG 172134129 >seq16 Length=188620566 Score = 105 bits (116), Expect = 1e-19 Identities = 229/341 (67%), Gaps = 20/341 (6%) Strand=Plus/Minus Query 1597 CTTTAATTTGAACTGGCTTTCCATATTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAA 1656 |||| || ||||| || |||| || || || || ||||||||| | ||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1657 TGAGCTCTTTCCAATGTTTCATCTTTTTATGGGGCGGGCTGACGTCATCGATGACGTTGT 1716 | || ||||| ||||| | || | ||| | |||| ||| || ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATT------GTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1717 ATTGGGCCTCGTTTGAGTAGACTCTTGGGTTGAAGTCCAGATGCCCGCTTAGATAATTAT 1776 ||| | ||||| ||| | || | || || ||||| | || || |||| |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1777 GTGGGCCCAATGCACGAGCCCACATCGTCTTCCCCGTCCGACTATCACCTTCAACTATGA 1836 || ||||||| | |||||||| ||||| || || | ||||||||||| ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1837 T--ACTAATAGGTCTGTCAGGCCGCGCAGCG-----GGATCAACACCGAAATAACTGTCC 1889 | ||| |||||| || || | |||| |||| || |||||| || Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAA-----AAATAATCATCT 2249047 Query 1890 GCCCACTCTTGCATCTCGTCTGGCACGTTAGTGAAGGAGGA 1930 ||||| | |||||| | | ||| ||||| ||||| || || Sbjct 2249046 GCCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8287865444320