Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028142.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq11 147 4e-32 seq13 145 1e-31 seq16 123 4e-25 >seq11 Length=168460249 Score = 147 bits (162), Expect = 4e-32 Identities = 256/371 (69%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1602 CCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTT 1661 ||| ||||||| ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1662 CCGTATTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTC 1721 ||||||||||||| ||||| | | ||| || || || || || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1722 AACTTTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTAT 1781 || |||||| |||| | |||||||||| ||| || || || | ||||||| | Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1782 ACCCTTGGGTTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCC 1841 || || |||| ||||| ||| || | || |||||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1842 CACATCGTTTTACCCGTTCGACTATCACCCTCAACAAT--CAAACTAATAGGTCTGTTGG 1899 ||||| ||||| | || | || ||| | | || ||| | ||||| | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1900 GCCGCGCAGCGGGATCAAGCCCAAAATAACTATCCGCCCACTCTTGCATCTCGTCTGGCA 1959 |||||||||||| | || ||||| || ||| ||||| ||||||| || ||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1960 CGTTAGTGAAG 1970 | ||||||||| Sbjct 165527257 CATTAGTGAAG 165527247 >seq13 Length=197258317 Score = 145 bits (160), Expect = 1e-31 Identities = 266/387 (69%), Gaps = 12/387 (3%) Strand=Plus/Plus Query 1606 CTCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGT 1665 ||||||| ||||| || | ||||| ||| || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1666 ATTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACT 1725 |||||||||| ||||| | ||| || || || || || ||||||||||| || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA-- 89851316 Query 1726 TTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCC 1785 |||||| |||| | |||||||||| ||| || || | ||||||||| | || Sbjct 89851317 ----GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1786 TT--GGGTTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCCCA 1843 || |||| ||||| ||| || | || |||||||| || || | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1844 CATCGTTTTACCCGTTCGACTATCACCCTCAACAATCA--AACTAATAGGTCTGTTGGGC 1901 ||| |||||||| || | ||||| || | || | ||| | ||||| | ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1902 CGCGCAGCGGGATCAAGCCCAAAATAACTATCCGCCCACTCTTGCATCTCGTCTGGCACG 1961 |||||||||| | || ||||| || ||| ||||| | ||||| || ||||| || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1962 TTAGTGAAGGAGGAGAGTGGAAACGGA 1988 ||||||||| || | ||| || ||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGA 89851577 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 230/336 (68%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1642 CTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1701 |||| || ||||| || |||| ||| ||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1702 TCAATTCCTTCCAGTGCTTCAACTTTAGGTATTGCGGTGTGACATCATCGATGACGTTAT 1761 |||||||||||||| |||| |||| || | || | ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTG------TTTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1762 ACTCCGCATCGTTTGAGTATACCCTTGGGTTGAAGTCCAGATGTCCGCTTAGATAGTTAT 1821 | ||| ||||||| ||| | ||| | || || ||||| | || || |||| ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1822 GCGGGCCTAATGCACGAGCCCACATCGTTTTACCCGTTCGACTATCACCCTCAACAATCA 1881 | || |||| | |||||||| || || || |||| |||||| |||| || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1882 --AACTAATAGGTCTGTTGGGCCGCGCAGCGGGATCAAGCCCAAAATAACTATCCGCCCA 1939 ||| |||||| || || | |||| || ||||||| ||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1940 CTCTTGCATCTCGTCTGGCACGTTAGTGAAGGAGGA 1975 | |||||| | | ||| ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8428663158432