Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028262.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq16 131 3e-27 seq11 91.5 3e-15 >seq16 Length=188620566 Score = 131 bits (144), Expect = 3e-27 Identities = 195/269 (72%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1730 CTTTAATTTGAACTGGCTTTCCGTACTT--AGTGTTGCTTTGCCAGTCTCTTTGGGCCCC 1787 |||| || ||||| || |||| |||||| | | |||||| ||||||||||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1788 CATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTA--C 1845 | ||||| || |||| |||| | || || | |||| |||||| ||||| || | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1846 CAGGCATCATTATTGTATACCTTTGGACTAAGGTCTAGATGTCCACACAAATAATTATGT 1905 || |||| ||| | | ||| | ||| | | ||||| || |||| |||||||||||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1906 GGTCCCAATGATCTAGCCCACATCGTCTTCCCCGTTCGACTGTCACCCTCTATCACAAT- 1964 |||||||||||| |||||||| ||||| || |||| ||||| || || | || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1965 -ACTTATGGGTCTCAAAGGCCGCGCAGCG 1992 ||| | |||||||| || || | |||| Sbjct 2249097 GACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 205/305 (67%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 1695 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAACTGGCTTTCCGTA 1754 |||||| ||||| || | ||| || || ||||| ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1755 CTTAGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1814 || || ||||| | || ||| || || || || ||||| ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1815 GTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATCATTATT---GTATACCTTTGG 1871 || || || |||||| |||| |||||| | || | || || | | || ||| Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTTT 165527428 Query 1872 ACTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCCAATGATCTAGCCCACATCGT 1931 | |||| | ||| ||||| | || |||||| |||||| ||||| |||||||| || Sbjct 165527427 GTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGT 165527368 Query 1932 CTTCCCCGTTCGACTGTCACCCTCTATCACAAT--ACTTATGGGTCTCAAAGGCCGCGCA 1989 || | || | | ||| | ||| | | |||| ||||||| ||||||||| Sbjct 165527367 TTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCA 165527310 Query 1990 GCGGC 1994 ||||| Sbjct 165527309 GCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703858690560