Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028985.1 Length=2788 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-21 seq11 96.9 6e-17 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 209/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1720 CCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTAT 1779 ||||| ||||| || | ||||||||| ||||| ||||| | || ||| || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1780 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1839 || ||| || ||||| | ||| || || || |||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1840 TGCGGATCGACGTCATCAATGATGTTATACCAAGCGTCGTTACTGTACACCTTTGGA-CT 1898 || || | |||||| |||||||| || | ||||||| | | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1899 T-AGATCTAAATGCCCACATAGATAATTATGTGGGCCTAGTGACCTAGCCCATACGGTCT 1957 | || || | ||| ||||||| || |||||| || | || || ||||| | || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1958 TTCCTGTTCTGCTTTCCCCTTCAATCACTAT--ACTAATCGGTCTACTTGGCCGCGCAGC 2015 | ||||| ||| || | ||| || | ||| ||| | ||||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGC 89851498 Query 2016 GGC 2018 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1720 CCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTAT 1779 ||||| ||||| || | ||||||||| ||||| ||||| | || ||| || |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1780 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1839 || || || ||||| | | ||| || || || |||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1840 TGCGGATCGACGTCATCAATGATGTTATACCAAGCGTCGTTACTGTACACCTTTGGACTT 1899 || || | |||||| |||||||| || ||||| ||| | | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1900 AGATCTAAATGCCCACATAGATAATTATGTGGGCCTAGTGACCTAGCCCATACGGTCTTT 1959 | || | ||| ||||||| || |||||| || | || || ||||| | || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1960 CCTGTTCTGCTTTCCCCTTCAATCACTAT--ACTAATCGGTCTACTTGGCCGCGCAGCGG 2017 | ||| ||| | |||| || | | | ||| | ||||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 2018 C 2018 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8809452769560