Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_028989.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq16 141 2e-30 seq13 98.7 2e-17 seq11 84.2 4e-13 >seq16 Length=188620566 Score = 141 bits (156), Expect = 2e-30 Identities = 194/267 (73%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1715 CTTTAATTTGAACTGGTTTACCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1774 |||| || ||||| ||||| | ||||||| || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1775 TGAATTCTTTAAAGTGCTTTAGATAATGCGGGTCGACGTCATCAATGACGTTATA--CCA 1832 ||||| || |||| |||| | | || |||| |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1833 AGCAGCATTACTGTACACTTTTGGACTTAAATCTAAATGACCGCATAAGTAATTATGTGG 1892 || | ||| | | || | ||| | || ||||||| ||| | ||| ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1893 TCCTAATGTCCTGGCCCACATTGTCTTCCCCGTCCTGCTATCACCCTCTATCACTAT--A 1950 ||| |||| || |||||||||||||| || || || |||||| || || | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1951 CTTATCGGTCTTAATGGCCGCGCAGCG 1977 || | ||||| ||||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 207/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGTTTACCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || ||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1740 CTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1799 ||| ||| ||||| | | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1800 ATGCGGGTCGACGTCATCAATGACGTTATACCAAGCAGCATTACTGTACACTTTTGGA-C 1858 || || | |||||| |||| ||| || | | | || | | |||||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1859 TTAAA-TCTAAATGACCGCATAAGTAATTATGTGGTCCTAATGTCCTGGCCCACATTGTC 1917 || | || | |||||| |||| ||| |||||| ||| || | || ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1918 TTCCCCGTCCTGCTATCACCCTCTATCACTAT--ACTTATCGGTCTTAATGGCCGCGCAG 1975 || || |||||| ||||| ||||| | ||| ||| | ||||| | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 1976 CGGC 1979 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 4e-13 Identities = 201/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGTTTACCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || ||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1740 CTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1799 ||| || ||||| | || ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1800 ATGCGGGTCGACGTCATCAATGACGTTATACCAAGCAGCATTACTGTACACTTTTGGACT 1859 || || | |||||| |||| ||| || ||| || | | |||||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1860 TAAATCTAAATGACCGCATAAGTAATTATGTGGTCCTAATGTCCTGGCCCACATTGTCTT 1919 || | |||||| |||| ||| |||||| ||| || | || ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1920 CCCCGTCCTGCTATCACCCTCTATCACTAT--ACTTATCGGTCTTAATGGCCGCGCAGCG 1977 | |||||| || ||| | ||| | | | |||| ||||| | |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1978 GC 1979 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665459313984