Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_029105.1 Length=2700 Score E Sequences producing significant alignments: (Bits) Value seq16 159 6e-36 >seq16 Length=188620566 Score = 159 bits (176), Expect = 6e-36 Identities = 178/238 (75%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 1675 CTTTAATTTGAACAGGCTTTCCGTACTTGCAATTGGATTGCCAGTCCCTTTGGGCCCCGA 1734 |||| || ||||| || |||| ||||||||| || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1735 TAAGTTCCTTCCAGTGCTTTAGCTTTAGATAATGCGGGCTTACATCATCAATGACGTTAT 1794 | |||||||||||| |||| | | || ||| | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1795 ACTCCACATTGTTCGAGTAAACCCTAGAATTGAAGTCTAGGTGCCCGCTCAAATAATTAT 1854 | ||||||| ||| ||| ||||| ||| ||| ||||||| | || || |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1855 GTGGGCCTAACGCTCGAGCCCACATCGTCTTTCCCGTTCGAGAATCCCCCTCGATGAT 1912 || || || | || |||||||| |||||||| |||| ||||| || || || || Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTAT 2249102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8531061495968