Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_029648.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq13 102 1e-18 seq11 91.5 3e-15 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 206/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1680 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1739 || || ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1740 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGAAAA 1799 || ||| || ||||| | ||| || || || |||||||| |||| |||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1800 TGCGGGTCGACGTCATCAATGACATTATACCAGGCGTCGTTACTGTAGACCTTGGGAC-- 1857 || || | |||||| |||| || || ||||||| | |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1858 TCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCT 1917 | ||||||| ||| ||||| | ||||||||| |||||| || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1918 TCCCCGTACGACTATCTCCTTCAATCACTAT--ACTTTGAGGTCTGTGTGGCCGCGCAGC 1975 | || || | ||| | ||| || | ||| |||||| |||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTG--GTCTCATCGGCCGCGCAGC 89851498 Query 1976 GGC 1978 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 202/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1680 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1739 || || ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1740 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGAAAA 1799 || || || ||||| | | ||| || || || |||||||| |||| ||| | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1800 TGCGGGTCGACGTCATCAATGACATTATACCAGGCGTCGTTACTGTAGACCTTGGGACTC 1859 || || | |||||| |||| || || |||| ||| | |||| || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1860 AGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCTTC 1919 |||||| ||| ||||| | ||||||||| |||||| || || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1920 CCCGTACGACTATCTCCTTCAATCACTAT--ACTTTGAGGTCTGTGTGGCCGCGCAGCGG 1977 | || | || |||| || | | | ||||| ||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1978 C 1978 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684659002272