Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_029804.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq13 127 4e-26 seq11 107 3e-20 >seq13 Length=197258317 Score = 127 bits (140), Expect = 4e-26 Identities = 211/302 (70%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1712 CCTGGATTGCAGAGGAAGATAGTGGGTATCCCGCCTTTAATTTGAATTGGCTTCCCGTAT 1771 ||||| ||||| || | ||| || ||||| || ||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1772 TTTGTGTTGCTTTGCCAATTTTGCTGGGCCCCCATGAATTCTTTAAAATGTTTTAGATAA 1831 || ||| ||||||||||| || || || || || ||||| | || || | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1832 TGCGGGTCTACGTCATCTATGATGTTATACCAGGCATCATTGCTATAGAC--TTTATTAT 1889 || || || |||||| |||||||| || | || || |||| ||| || | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1890 TGAGATCCAGGTGTCCACATAGGTAATTATGTGGACCTAGAGAACGTGCCCAAACAGTTT 1949 |||| |||| || ||||||| ||| |||||| || | ||| | |||||| | |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1950 TACCTGTACGACTATCACCTTCAATAACAAT--ACTTTGAGGTCTCAATGGCCGCGCAGC 2007 ||||||| | ||||| ||| || | || ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 2008 GG 2009 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 207/301 (69%), Gaps = 6/301 (2%) Strand=Plus/Minus Query 1712 CCTGGATTGCAGAGGAAGATAGTGGGTATCCCGCCTTTAATTTGAATTGGCTTCCCGTAT 1771 ||||| ||||| || | ||| || ||||| || ||||| | || ||||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1772 TTTGTGTTGCTTTGCCAATTTTGCTGGGCCCCCATGAATTCTTTAAAATGTTTTAGATAA 1831 || || ||||||||| | || || || || || ||||| | || | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1832 TGCGGGTCTACGTCATCTATGATGTTATAC-CAGGCATCATTGCTATAGACTTTATTATT 1890 || || || |||||| |||||||| || ||| | ||| | ||||||| || || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA-AGACTTTTTTGTT 165527425 Query 1891 GAGATCCAGGTGTCCACATAGGTAATTATGTGGACCTAGAGAACGTGCCCAAACAGTTTT 1950 | | |||| || ||||||| ||| |||||| || | ||| | |||||| | ||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1951 ACCTGTACGACTATCACCTTCAATAACAAT--ACTTTGAGGTCTCAATGGCCGCGCAGCG 2008 | ||| | || ||||| || | | |||||| |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTG--GTCTCATCGGCCGCGCAGCG 165527307 Query 2009 G 2009 | Sbjct 165527306 G 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719858430800