Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_029908.1
Length=2610
Score E
Sequences producing significant alignments: (Bits) Value
seq13 179 6e-42
seq11 158 2e-35
seq16 156 7e-35
>seq13
Length=197258317
Score = 179 bits (198), Expect = 6e-42
Identities = 261/366 (71%), Gaps = 12/366 (3%)
Strand=Plus/Plus
Query 1540 CCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCCGTAT 1599
|| || ||||| || | ||||| ||| || || ||||| | || ||||||| |||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1600 TTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAGCTCTTTCCAGTGCTTTAGCTTT 1659
||||| || |||||||| | || ||| ||||| | | ||||||||||| ||||
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCTTG 89851314
Query 1660 AAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCATTCGAAAAGACTCGA 1719
|| || || |||| | ||||| |||| ||| || || || || || || ||||||
Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374
Query 1720 GC--ATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACA 1777
| |||| ||||| ||| |||| | ||||||||| || || | | ||||||||
Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434
Query 1778 TTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA--GACTTACTGGTCTTTCCGGCCG 1835
|||| || |||||||| ||||||| ||| | || | ||||| |||||| ||||||
Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492
Query 1836 CGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCACTCTTGCATCTCTTCGGGAACGTT 1895
|||||||| |||||| || ||| ||||| | ||||| ||||| || || ||
Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552
Query 1896 AGTGAA 1901
||||||
Sbjct 89851553 AGTGAA 89851558
Score = 93.3 bits (102), Expect = 7e-16
Identities = 172/249 (69%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 1655 GCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCATTCGAAAAGA 1714
|||| || || || |||| | ||||| |||| ||| || || | | || || ||||
Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942
Query 1715 CTCGAGCATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCC 1774
|| |||| ||||| || |||| | ||||||||| || | | | |||||
Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001
Query 1775 ACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA--GACTTACTGGTCTTTCCGG 1832
||||||| || ||||| || |||| |||||| | || | ||||| |||||| ||||
Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTT--TGGTCTCACCGG 172134059
Query 1833 CCGCGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCACTCTTGCATCTCTTCGGGAAC 1892
||| ||||||| | ||||| || ||| ||||| ||||||| ||||| | ||
Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119
Query 1893 GTTAGTGAA 1901
||||||||
Sbjct 172134120 ATTAGTGAA 172134128
>seq11
Length=168460249
Score = 158 bits (174), Expect = 2e-35
Identities = 260/374 (70%), Gaps = 16/374 (4%)
Strand=Plus/Minus
Query 1533 ACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTT 1592
|||| | || || ||||| |||| ||||| ||| || || ||||| | || ||||||
Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551
Query 1593 GCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAGCTCTTTCCAGTGCTT 1652
|||||||||||| | |||||||| | | ||| ||||| | | |||||||||||
Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT---- 165527495
Query 1653 TAGCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCATTCGAAAA 1712
|| | || || || |||| | ||||| |||| ||| || || | | || || ||
Sbjct 165527494 --GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437
Query 1713 GACTCGAGCATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGC 1772
|||| ||| ||||| ||| |||| | ||||||||| || || | | |||
Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377
Query 1773 CCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA-----GACTTACTGGTCTT 1827
||||||||| || | |||||| |||| ||||| ||||| ||||| ||||||
Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTT--TGGTCTC 165527322
Query 1828 TCCGGCCGCGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCACTCTTGCATCTCTTCG 1887
|||||||||||||| ||||| || ||| ||||| ||||||| |||||
Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262
Query 1888 GGAACGTTAGTGAA 1901
|| || ||||||||
Sbjct 165527261 GGTACATTAGTGAA 165527248
>seq16
Length=188620566
Score = 156 bits (172), Expect = 7e-35
Identities = 238/336 (71%), Gaps = 10/336 (3%)
Strand=Plus/Minus
Query 1574 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCA 1633
|||| || ||||| || || | ||| ||||| || | ||||||||| ||||||| || |
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1634 GCAGCTCTTTCCAGTGCTTTAGCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTAT 1693
| | || |||||||| |||| | || ||| | | || | |||||| |||||||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220
Query 1694 ACTCCACTTCATTCGAAAAGACTCGAGCATTGAAGTCCAGATGTCCACTGAGATAGTTAT 1753
| ||||| || || || || || || ||| ||||| | || ||||| | ||| ||||
Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160
Query 1754 GTGGGCCTAACGCACGTGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA 1813
|| || || | | ||||||||||||||| || || |||||||||||||| | ||| |
Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100
Query 1814 --GACTTACTGGTCTTTCCGGCCGCGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCA 1871
|||| | ||||| || || | |||| | | |||||| ||||| |||||
Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042
Query 1872 CTCTTGCATCTCTTCGGGAACGTTAGTGAAAGAGGA 1907
| |||||| ||| || ||||| |||||||| ||
Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8243066171648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |