Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_029908.1 Length=2610 Score E Sequences producing significant alignments: (Bits) Value seq13 179 6e-42 seq11 158 2e-35 seq16 156 7e-35 >seq13 Length=197258317 Score = 179 bits (198), Expect = 6e-42 Identities = 261/366 (71%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1540 CCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCCGTAT 1599 || || ||||| || | ||||| ||| || || ||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1600 TTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAGCTCTTTCCAGTGCTTTAGCTTT 1659 ||||| || |||||||| | || ||| ||||| | | ||||||||||| |||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCTTG 89851314 Query 1660 AAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCATTCGAAAAGACTCGA 1719 || || || |||| | ||||| |||| ||| || || || || || || |||||| Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1720 GC--ATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACA 1777 | |||| ||||| ||| |||| | ||||||||| || || | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1778 TTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA--GACTTACTGGTCTTTCCGGCCG 1835 |||| || |||||||| ||||||| ||| | || | ||||| |||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1836 CGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCACTCTTGCATCTCTTCGGGAACGTT 1895 |||||||| |||||| || ||| ||||| | ||||| ||||| || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1896 AGTGAA 1901 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 93.3 bits (102), Expect = 7e-16 Identities = 172/249 (69%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1655 GCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCATTCGAAAAGA 1714 |||| || || || |||| | ||||| |||| ||| || || | | || || |||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1715 CTCGAGCATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCC 1774 || |||| ||||| || |||| | ||||||||| || | | | ||||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1775 ACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA--GACTTACTGGTCTTTCCGG 1832 ||||||| || ||||| || |||| |||||| | || | ||||| |||||| |||| Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTT--TGGTCTCACCGG 172134059 Query 1833 CCGCGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCACTCTTGCATCTCTTCGGGAAC 1892 ||| ||||||| | ||||| || ||| ||||| ||||||| ||||| | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1893 GTTAGTGAA 1901 |||||||| Sbjct 172134120 ATTAGTGAA 172134128 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 260/374 (70%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 1533 ACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTT 1592 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1593 GCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCAGCAGCTCTTTCCAGTGCTT 1652 |||||||||||| | |||||||| | | ||| ||||| | | ||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT---- 165527495 Query 1653 TAGCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCATTCGAAAA 1712 || | || || || |||| | ||||| |||| ||| || || | | || || || Sbjct 165527494 --GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1713 GACTCGAGCATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGC 1772 |||| ||| ||||| ||| |||| | ||||||||| || || | | ||| Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1773 CCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA-----GACTTACTGGTCTT 1827 ||||||||| || | |||||| |||| ||||| ||||| ||||| |||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTT--TGGTCTC 165527322 Query 1828 TCCGGCCGCGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCACTCTTGCATCTCTTCG 1887 |||||||||||||| ||||| || ||| ||||| ||||||| ||||| Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 1888 GGAACGTTAGTGAA 1901 || || |||||||| Sbjct 165527261 GGTACATTAGTGAA 165527248 >seq16 Length=188620566 Score = 156 bits (172), Expect = 7e-35 Identities = 238/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1574 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTGGACTGCCAGTCTTTTTGTGCTCCCA 1633 |||| || ||||| || || | ||| ||||| || | ||||||||| ||||||| || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1634 GCAGCTCTTTCCAGTGCTTTAGCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTAT 1693 | | || |||||||| |||| | || ||| | | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1694 ACTCCACTTCATTCGAAAAGACTCGAGCATTGAAGTCCAGATGTCCACTGAGATAGTTAT 1753 | ||||| || || || || || || ||| ||||| | || ||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1754 GTGGGCCTAACGCACGTGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA 1813 || || || | | ||||||||||||||| || || |||||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1814 --GACTTACTGGTCTTTCCGGCCGCGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCA 1871 |||| | ||||| || || | |||| | | |||||| ||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1872 CTCTTGCATCTCTTCGGGAACGTTAGTGAAAGAGGA 1907 | |||||| ||| || ||||| |||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8243066171648