Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_029995.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq13 98.7 2e-17 seq11 84.2 4e-13 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 185/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1719 CTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1778 |||| || |||| ||||| | |||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1779 TGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTATA--CCA 1836 ||||| || |||| |||| | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1837 AGCATCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGAGG 1896 |||| ||| | | || | || | | || | || |||| |||||||| || Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1897 TCCCAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCAATTACTATACT 1956 ||||| |||||| ||||||||||| || || || | |||||||||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1957 TTTGGGTCTCCATGGCCGCGCAGCG 1981 | |||||| |||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 207/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1684 TCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTA 1743 |||||| ||||| || | ||| ||||| || || ||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1803 || ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1804 GTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGG-C 1862 || || | |||||| |||| ||| || | | || || | | |||||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1863 TT-AGATCAAGATGTCCACACAAATAATTGTGAGGTCCCAGTGATCTGGCCCACATTGTT 1921 || || || | ||| ||||| | || || || ||||| ||||| |||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1922 TTACCCGTACGACTATCACCTTCAATTACTAT--ACTTTTGGGTCTCCATGGCCGCGCAG 1979 ||||| || | ||||| ||| || | ||| ||||| |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1980 CGGC 1983 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 4e-13 Identities = 201/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1684 TCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTA 1743 |||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1744 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1803 || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1804 GTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCT 1863 || || | |||||| |||| ||| || ||| | || | | |||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1864 TAGATCAAGATGTCCACACAAATAATTGTGAGGTCCCAGTGATCTGGCCCACATTGTTTT 1923 | || | ||| ||||| | || || || ||||| ||||| |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1924 ACCCGTACGACTATCACCTTCAATTACTAT--ACTTTTGGGTCTCCATGGCCGCGCAGCG 1981 | || | || ||||| || | | | ||||| |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1982 GC 1983 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684659002272