Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_030310.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 3e-14 seq13 87.8 3e-14 seq11 86.0 1e-13 >seq16 Length=188620566 Score = 87.8 bits (96), Expect = 3e-14 Identities = 182/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1738 CTTTAATTTGAATTGGCTTTCCGTACTTGGTATTGCTTTGCCAGTCACGCTGGGCCCCCA 1797 |||| || |||| || |||| ||||||| || ||||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1798 TGAACTCTTTAAAGTGCTTTAGGTAGTGCGGATCGACGTCATCAATGACGTTATA--CCA 1855 || || || |||| |||| | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1856 GGCATCATTGGAATACACCTTTGGGCTGAGATCGAGATGCCCACACAGATAATTGTGTGG 1915 |||| || || | ||| | || | | || | || |||| | |||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1916 TCCCAAAGACCGGGCCCACATTGTCTTCCCGGTCCGACTGTCTCCTTCGATGACAAT--A 1973 |||||| || | |||||||||||||| ||||| | || ||||| || | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1974 CTGATCGGTCTCCATGGCCGCGCAGCG 2000 |||| |||||| |||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 203/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1703 TCCAGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTA 1762 ||| || ||||| || | ||| || || ||||| ||||| | || ||||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1763 CTTGGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTA 1822 ||| || ||||| | | || || || || |||||||| ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1823 GTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATTGGAATACACCTTTGGGC- 1881 || || | |||||| |||| ||| || | || || || | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1882 -TGAGATCGAGATGCCCACACAGATAATTGTGTGGTCCCAAAGACCGGGCCCACATTGTC 1940 |||| || | ||| ||||| | || || ||| ||||||||| | ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1941 TTCCCGGTCCGACTGTCTCCTTCGATGACAAT--ACTGATCGGTCTCCATGGCCGCGCAG 1998 || || |||| || | ||| |||| || ||| | |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 1999 CGG 2001 ||| Sbjct 89851498 CGG 89851500 >seq11 Length=168460249 Score = 86.0 bits (94), Expect = 1e-13 Identities = 170/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 1703 TCCAGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTTCCGTA 1762 ||| || ||||| || | ||| || || ||||| ||||| | || ||||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1763 CTTG--GTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGG 1820 ||| ||| || |||| | || || || || || |||||||| ||||| | | | Sbjct 165527544 TTTGCAGTAAGACT--GCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAG 165527487 Query 1821 TAGTGCGGATCGACGTCATCAATGACGTTATACCAGGCATCATTGGAATACACCTTTGGG 1880 || || || | |||||| |||| ||| || || | || || | || ||| | Sbjct 165527486 TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1881 CTGAGATCGAGATGCCCACACAGATAATTGTGTGGTCCCAAAGACCGGGCCCACATTGTC 1940 || | || | ||| ||||| | || || ||| ||||||||| | ||||||||||| Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1941 TTCCCGGTCC 1950 || | |||| Sbjct 165527366 TTGCTTGTCC 165527357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8739053946120