Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_030749.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq13 107 3e-20 >seq13 Length=197258317 Score = 107 bits (118), Expect = 3e-20 Identities = 206/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1670 CCAGGATTGCACAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1729 || || ||||| || | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1730 TTCGTATTTGATTGCCAGTCCCGTTGGGCCCCCATGAATTCTTTAAAGTGTTTGAGGAAG 1789 || || || ||||| | |||| || || || || ||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1790 TGGGGATCTACGTCATCAATGACGTTGTACCAAGCATCGTTGCTGTAGACCTTTGGG-CT 1848 || || || |||||| |||| |||||| | | ||||| | |||| ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1849 T-AGATCCAAATGGCCACATAGATAGTTGTGTGGGCCTAGAGACCTAGCCCACATCGTCT 1907 | || |||| ||| ||||||| ||||| ||| || | ||| || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1908 TCCCGGTACGACTGTCTCCCTCAATCACTATACTCATTGGTCTTAGGGGCCGCGCAGCGG 1967 | || || | || | || || | ||| | ||||||| | ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1968 C 1968 | Sbjct 89851501 C 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659059417888