Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031306.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq16 149 1e-32 seq13 129 1e-26 seq11 127 4e-26 >seq16 Length=188620566 Score = 149 bits (164), Expect = 1e-32 Identities = 193/265 (73%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1717 CTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCA 1776 |||| || ||||| || |||| |||||| |||| ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1777 TGAATTCTTTAAAGTGTTTTAGATAGTGCGGATCTACGTCATCAATGACGTTGTA--CCA 1834 ||||| || ||||||||| | | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1835 AGCATCATTGTTGTACACTCTAGGGCTTAGATCTAGATGCCCACACAAGTAATTATGTGG 1894 |||| || | | || |||| | | |||| || |||| || ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1895 TCCCAGTGATCGTGCCCACATCGTTTTTCCTGTTCTACTATCACCTTCAATTACTATACT 1954 ||||| ||||| ||||||||| || ||||| ||||| |||||||||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1955 TTTGGGTCTCAACGGCCGCGCAGCG 1979 | |||||||| || || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 129 bits (142), Expect = 1e-26 Identities = 216/305 (71%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1682 TCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1741 |||||| ||||| || | ||| || || || |||||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1742 CTTTGTATTT-GATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGAT 1800 |||| | || || ||||| | | ||| || || || || ||||| |||| || | | Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1801 AGTGCGGATCTACGTCATCAATGACGTTGTACCAAGCATCATTGTTGTACACTCTAGGG- 1859 | || || || |||||| |||| |||||| | | || || | | ||| | Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1860 CTT-AGATCTAGATGCCCACACAAGTAATTATGTGGTCCCAGTGATCGTGCCCACATCGT 1918 ||| || || | ||| ||||| | ||| |||||| ||||| |||| ||||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1919 TTTTCCTGTTCTACTATCACCTTCAATTACTAT--ACTTTTGGGTCTCAACGGCCGCGCA 1976 ||| ||||| || ||||| ||| || | ||| ||||| ||||||| |||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1977 GCGGC 1981 ||||| Sbjct 89851497 GCGGC 89851501 Score = 86.0 bits (94), Expect = 1e-13 Identities = 114/153 (75%), Gaps = 9/153 (6%) Strand=Plus/Plus Query 1875 CCACACAAGTAATTATGTGGTCCCAGTGATCGTGCCCACATCGTTTTTCCTGTTCTACTA 1934 ||||| | ||| |||||| ||||| |||| ||||||||| ||||| |||||||| | Sbjct 172133965 CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGAA 172134024 Query 1935 TCACCTTCAATTACTAT--ACTTTTGGGTCTCAACGGCCGCGCAGCGGCACTG---ACGA 1989 | |||||| || | || ||||| ||||||| |||||| |||||||| || || | Sbjct 172134025 TTACCTTCTATGATTACTGACTTT--GGTCTCACCGGCCGTGCAGCGGCT-TGTATACCA 172134081 Query 1990 CATTCTCG-TCTGCCCATTCTTCAAGTTCTTCT 2021 | | | ||||||||||||| || |||||| Sbjct 172134082 AAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 172134114 >seq11 Length=168460249 Score = 127 bits (140), Expect = 4e-26 Identities = 243/351 (69%), Gaps = 9/351 (3%) Strand=Plus/Minus Query 1682 TCCTGGATTGCAGAGGAAGATAGTGGGAATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1741 |||||| ||||| || | ||| || || || |||||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1742 CTTTGTATTT-GATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGAT 1800 |||| | | || ||||| | || ||| || || || || ||||| |||| | | | Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1801 AGTGCGGATCTACGTCATCAATGACGTTGTACCAAGCATCATTGTTGTACACTCTAGGGC 1860 | || || || |||||| |||| |||||| ||| | || | | ||| | | Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1861 TTAGATCTAGATGCCCACACAAGTAATTATGTGGTCCCAGTGATCGTGCCCACATCGTTT 1920 | | || | ||| ||||| | ||| |||||| ||||| |||| ||||||||| |||| Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1921 TTCCTGTTCTACTATCACCTTCAATTACTAT--ACTTTTGGGTCTCAACGGCCGCGCAGC 1978 | | ||| || || ||||| || | | | ||||| ||||||| |||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308 Query 1979 GGC--ACTGACGACATTCT-CGTCTGCCCATTCTTCAAGTTCTTCTGGAAC 2026 ||| ||| | | | | ||||||||||||| || |||||||| || Sbjct 165527307 GGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687858950320