Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031340.1 Length=2905 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1902 CGGCTTTCCGTATTTTGTGTTGGATTGCCAGCCCACCTGGGCCCCCATGAATTCTTTAAA 1961 ||| |||| ||| || || | ||||||| | || || || | ||||| || | Sbjct 2249320 CGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCA 2249261 Query 1962 ATGTTTTAAATAATGTGGGTCTACATCATCTATTATATTATAATCTGCATCTAAACTAAA 2021 ||||||||| | ||||||| || | ||| || | ||||| || |||| | || Sbjct 2249260 GTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCACATCGTTAGAGAA 2249201 Query 2022 TACCTTATCGTTTAAATCTAAATGGCCACTTAAATAATTATGTTTTCCTAGTGCCCTAGC 2081 ||| || || || ||||||| |||||||||||||||||| |||| | || || || Sbjct 2249200 AACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGATCTTGC 2249141 Query 2082 CCATAATGTTTTTCCCGTCCTTGAATCTCCCTCTAATACTAATGATTTAGGTCTTAATGG 2141 ||| | ||| ||||| || |||||||| || || | || || ||| | |||||| ||||| Sbjct 2249140 CCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACTGAGGTCTCAATGG 2249081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9183846512400