Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031448.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq16 156 7e-35 seq11 122 1e-24 seq13 95.1 2e-16 >seq16 Length=188620566 Score = 156 bits (172), Expect = 7e-35 Identities = 241/340 (71%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1606 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAA 1665 |||| || ||||| || || | ||| ||||| |||| |||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1666 TCAATTCTTTCCAATGCTTTAACTTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGT 1725 ||||| ||||| || ||||| | || ||||| | | || ||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1726 ATTGCACATGGTTTGAATAGACCCGTGAATTGAAATCTAGGTGGCCGCTCAAATAATTGT 1785 ||| ||||| ||| || | ||| | ||| || |||| | || || |||||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1786 GGACCCCCAATGCACGTGCCCACATCGTCTTCCCCGTTCTAGAATCACCTTCGACGATGA 1845 | ||||||| | ||||||||| ||||| || ||||| ||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1846 T--ACTGATAGGTCTTTCCGGCCGCGCAGCGGCACCTCTC----CCGAAATAATCATCTG 1899 | |||| |||||| || || | |||| || || ||||||||||||| Sbjct 2249099 TTGACTG--AGGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1900 CCCAGTCTTGCATCTCTCTCGGCACGTTAGTGAAAGAGGA 1939 |||| | |||||| || || ||||| |||||||| || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 122 bits (134), Expect = 1e-24 Identities = 250/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1566 CCCTCACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTG 1625 ||| | || || ||||| |||| ||| ||| || |||||||| | || ||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1626 CCGTATTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTT 1685 ||||||||||| | || ||||| | | |||||| ||||| || |||||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1686 AACTTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTATTGCACATGGTTTGAATAG 1745 || || || |||| |||||| || |||| |||||| | | | |||||| || Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1746 ACCCGTGAATTGAAATCTAGGTGGCCGCTCAAATAATTGTGGACCCCCAATGCACGTGCC 1805 || | ||| || | || || | | || || || ||||| | | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1806 CACATCGTCTTCCCCGTTCTAGAATCACCTTCGACGATGAT--ACTGATAGGTCTTTCCG 1863 ||||| || || | || || |||| ||||| | ||| | ||| | ||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1864 GCCGCGCAGCGGCACCTCTCCCGAAATAATCATCTGCCCAGTCTTGCATCTCTCTCGGCA 1923 ||||||||||||| | || || || ||||||||| ||||||| ||| || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1924 CGTTAGTGAA 1933 | |||||||| Sbjct 165527257 CATTAGTGAA 165527248 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 440/683 (64%), Gaps = 24/683 (4%) Strand=Plus/Plus Query 1802 TGCCCACATCGTCTTCCCCGTTCTAGAATCACCTTCGACGATGATACTGA--TAGGTCTT 1859 ||||||||| || || || ||||| |||| |||||| | ||| |||||| | ||||| Sbjct 172133997 TGCCCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTC 172134054 Query 1860 TCCGGCCGCGCAGCGGCACCTCTCCCGAAATAATCATCTGCCCAGTCTTGCATCTCTCTC 1919 ||||||| |||||||| | | || || || ||||||||| ||||||| ||| Sbjct 172134055 ACCGGCCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 172134114 Query 1920 GGCACGTTAGTGAAAGAGGAGAGGTGAAACGGAGGAGTCCATGGCTCCGGAGCCTTTGCA 1979 | || |||||||| || | | || ||| |||||| | | || || || Sbjct 172134115 AGTACATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCA 172134174 Query 1980 AAAATTCTGTCCAAATTGCTAGAGAGGTTGTGATATTGGAAGAGAAACTTTTCTGGTAGT 2039 | | ||| |||| ||| || |||||||| || |||||||| | | ||| || Sbjct 172134175 TAGACTCTATCCAGGTTGAAGTTGATGTTGTGATGCTGTAAGAGAAAGTCTCTGGGTTGT 172134234 Query 2040 TTCTCTTTTATTATTGTCATGGCTTCTTCCTTTGAAGAAGCATTC-AGTGCCTCCGATGC 2098 | ||| | || | || || || || || | | ||| | ||||| || ||| Sbjct 172134235 TCATCTCTAATAACCTGCAATGCCTCGTCTTTAGC-GTTGCACACCAGTGC-TC---TGC 172134289 Query 2099 TGCATCATTAGTTGTCTGTTGACCTCCT-----CTAGCAGATCTTCCGTCGATTTGAAAA 2153 | || | |||| | || | || || | |||| |||| | | ||||| Sbjct 172134290 CGTATGTTGTGTTGGGA-TCGAAATTCTGATTTCTGGTAGATGTTCCATGTTTCTGAAAC 172134348 Query 2154 TGACCCCATTCGACGTAATCACCGTCTTTCTCGATGTAGGACTTGACATCAGAGGAT-GA 2212 ||||| |||| |||||||||||||| ||||| ||||| ||| | || Sbjct 172134349 ATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACA-AAGAAACTGGA 172134407 Query 2213 CTTTGCACTCTGTATATTGGCATGGGAGACGGAAGAGGTGTTTGGATGTATGAGGTCGAA 2272 || ||| |||||| | | ||| | | ||| || ||||| || ||||||| || Sbjct 172134408 TTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGAGGTCAAA 172134467 Query 2273 GAATCTGCAATTCGTGCACTGGAACTTTCCTTGGAAT-TGAATGAGAGCATGCAAATGCG 2331 |||||| ||| || | ||| |||| || || || || | | |||| | ||| | Sbjct 172134468 GAATCTTGGATTTTGACATTTGAA-TTTCTTTTCCATCTGCATCAAAACATGAAGATGAG 172134526 Query 2332 GTTCCCCATTTTCGTGAAATTCTCTGCAGATTCTGATGTAT-TTCTTGTTGACT---GGT 2387 | | | | |||||| | |||| ||||||| ||| ||| | |||| | || || Sbjct 172134527 GCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGATCGCTGAAGGA 172134586 Query 2388 GTTTCTAGGTTTTGTAGTTGTTCAATTGCACTCTCTTTTGTAACTGAGCATTTGGGGTAT 2447 || ||| || |||||||||| | ||||| | || ||||||| |||||| Sbjct 172134587 ATTGGTAGAACTTTCAGTTGTTCAAGATAATATTCTTTGGATACATAGCATTTTGGGTAT 172134646 Query 2448 GTGAGGAAGTAATTCTTGGCGTT 2470 |||| |||||| |||||||| || Sbjct 172134647 GTGATGAAGTAGTTCTTGGCATT 172134669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313465028704