Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031451.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value seq16 174 3e-40 seq13 163 5e-37 seq11 136 7e-29 >seq16 Length=188620566 Score = 174 bits (192), Expect = 3e-40 Identities = 241/336 (72%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1593 CTTTAATTTGAACTGGCTTGCCGTATTTACAATTTGACTGCCAGTCTTTCTGGGCCCCAA 1652 |||| || ||||| || || | ||| || || |||| ||||||||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1653 TCAGTTCCTTCCAATGCTTTAACTTTAGATATTGCGGACTGACGTCATCGATGACGTTAA 1712 | ||||||||| || ||||| | |||| || | |||| ||| || |||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1713 ACTCCACTTCGTTTGAGTAAATTCGAGCATTGAAATCCAGATGTCCACTTAAGTAGTTAT 1772 | ||||| ||||| ||| ||| || ||| || || | || |||||||| || |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1773 GTGGGCCTAATGAACGAGCCCACATTGTCTTCCCTGTTCTCGAATCACCTTCTACTATGA 1832 || || ||||| | |||||||||||||| || ||||| ||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1833 T--ACTGATTGGTCTTTCTGGCCGCGCAGCGGAACCCCTTCCAAAATATTCATCCGCCCA 1890 | ||||| ||||| ||| || | |||| | | |||||| ||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1891 CTCTTGCATCTCGTCTGGAACGTTAGTGAAAGATGA 1926 | |||||| | | ||| ||||| |||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 163 bits (180), Expect = 5e-37 Identities = 278/400 (70%), Gaps = 16/400 (4%) Strand=Plus/Plus Query 1555 CCAGGATTGCAGAGCACGATTGCTGGGATCCATCCCTCCTTTAATTTGAACTGGCTTGCC 1614 || || ||||| || | ||||| ||| || | ||||||| | || ||||||| | Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGC----CTCCTTTGACAAGACTTGGCTTGTC 89851256 Query 1615 GTATTTACAATTTGACTGCCAGTCTTTCTGGGCCCCAATCAGTTCCTTCCAATGCTTTAA 1674 |||||| || || |||||||| | || || || ||||| | || ||||| ||||| || Sbjct 89851257 GTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA 89851316 Query 1675 CTTTAGATATTGCGGACTGACGTCATCGATGACGTTAAACTCCACTTCGTTTGAGTAAAT 1734 | |||| || | ||||||||||| ||| | || || ||||||||| | | Sbjct 89851317 GT------ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGAC 89851370 Query 1735 TCGAGCAT--TGAAATCCAGATGTCCACTTAAGTAGTTATGTGGGCCTAATGAACGAGCC 1792 | | | ||| |||| ||| |||| || |||||||||| || || || | ||| Sbjct 89851371 TTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCC 89851430 Query 1793 CACATTGTCTTCCCTGTTCTCGAATCACCTTCTACTATGAT--ACTGATTGGTCTTTCTG 1850 |||||||| || ||||| || ||||||| ||||| || || ||| ||||||| | Sbjct 89851431 CACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCG 89851488 Query 1851 GCCGCGCAGCGGAACCCCTTCCAAAATATTCATCCGCCCACTCTTGCATCTCGTCTGGAA 1910 |||||||||||| |||||| ||| ||| ||||| | ||||| || ||||| | Sbjct 89851489 GCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTA 89851548 Query 1911 CGTTAGTGAAAGATGATAGTTGAAACGGAGGAACCCATGG 1950 | |||||||| ||||| | | || ||| ||| |||| Sbjct 89851549 CATTAGTGAAGCTTGATAATGGGAATGGACTTACCTATGG 89851588 Score = 113 bits (124), Expect = 7e-22 Identities = 186/265 (70%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 1696 GTCATCGATGACGTTAAACTCCACTTCGTTTGAGTAAATTCGAGCATTGAAATCCAGATG 1755 ||||||||||| ||| | || | | ||||||| | | | |||| |||| || Sbjct 172133905 GTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAATTG 172133964 Query 1756 TCCACTTAAGTAGTTATGTGGGCCTAATGAACGAGCCCACATTGTCTTCCCTGTTCTCGA 1815 |||| || |||||||||| || | || | ||||||||||| || |||||||| || Sbjct 172133965 -CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGA 172134023 Query 1816 ATCACCTTCTACTATGATACTGA--TTGGTCTTTCTGGCCGCGCAGCGGAACCCCTTCCA 1873 || |||||||| || |||||| ||||||| | ||||| ||||||| | ||| Sbjct 172134024 ATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTTGTATACCA 172134081 Query 1874 AAATATTCATCCGCCCACTCTTGCATCTCGTCTGGAACGTTAGTGAAAGATGATAGTTGA 1933 || ||| ||| ||||| ||||||| || ||| | || |||||||| ||||| | Sbjct 172134082 AAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAGCTTGATAACGGG 172134141 Query 1934 AACGGAGGAACCCATGGTTCTGGAG 1958 || ||| |||||||| ||| || Sbjct 172134142 AATGGACATACCCATGGAGCTGTAG 172134166 >seq11 Length=168460249 Score = 136 bits (150), Expect = 7e-29 Identities = 275/406 (68%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 1555 CCAGGATTGCAGAGCACGATTGCTGGGATCCATCCCTCCTTTAATTTGAACTGGCTTGCC 1614 || || ||||| |||| ||||| ||| || | ||||||| | || ||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGC----CTCCTTTGAAAAGACTTGGCTTGCC 165527548 Query 1615 GTATTTACAATTTGACTGCCAGTCTTTCTGGGCCCCAATCAGTTCCTTCCAATGCTTTAA 1674 |||||| || | |||||||| | | || || ||||| | || ||||| ||| | || Sbjct 165527547 GTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAA 165527488 Query 1675 CTTTAGATATTGCGGACTGACGTCATCGATGACGTTAAACTCCACTTCGTTTGAGTAAAT 1734 | |||| || | ||||||||||| ||| | || | | ||||||| | | Sbjct 165527487 GT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 165527434 Query 1735 TCGAGCATTGAAATCCAGATGTCCACTTAAGTAGTTATGTGGGCCTAATGAACGAGCCCA 1794 | ||| |||| ||| |||| || |||||||||| || || || | ||||| Sbjct 165527433 TTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCA 165527374 Query 1795 CATTGTCTTCCCTGTTCTCGAATCACCTTCTACTATGATACTGA--TTGGTCTTTCTGGC 1852 |||||| || | ||| || |||| ||||| || || | ||| ||||||| ||| Sbjct 165527373 CATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCGGC 165527316 Query 1853 CGCGCAGCGGAACCCCTTCCAAAATATTCATCCGCCCACTCTTGCATCTCGTCTGGAACG 1912 |||||||||| ||||| ||| ||| ||||| ||||||| || ||||| || Sbjct 165527315 CGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACA 165527256 Query 1913 TTAGTGAAAGATGATAGTTGAAACGGAGGAACCCATGGTTCTGGAG 1958 |||||||| ||||| | || ||| |||||||| ||| || Sbjct 165527255 TTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAG 165527210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8278265600176