Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031452.1 Length=2636 Score E Sequences producing significant alignments: (Bits) Value seq13 120 5e-24 seq11 114 2e-22 >seq13 Length=197258317 Score = 120 bits (132), Expect = 5e-24 Identities = 252/370 (68%), Gaps = 17/370 (5%) Strand=Plus/Plus Query 1561 CCAGGATTGCAAAGCACGATTGATGGGATGGATCCCGCCTTTAATTTGAACCGGCTTTCC 1620 || || ||||| || | ||||| ||| ||| || ||||| | || ||||| | Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATG----CCTCCTTTGACAAGACTTGGCTTGTC 89851256 Query 1621 GTATTTGCAGTTCGATTGCCAGTCCTTTTGAGC-CCAATCAATTCTTTCCAGTGCTTTAG 1679 |||||||||||| || ||||| | | |||||| ||||| || |||||||||||||| | Sbjct 89851257 GTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA- 89851315 Query 1680 CTTTAGATAGAGCGGTGCGATGTCATCTATCACGTTGTATTGGGCCAAATTCGAATAGAC 1739 || || | |||| |||||||| || | |||||| | | || || |||| Sbjct 89851316 ----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGAC 89851370 Query 1740 --CCTCGAATTGAAATCGAGGTGACCACTCAGGTAATTGTGGACCCCCAAGGCACGTGCC 1797 || |||| || | ||||||| | ||| || || ||||| | | |||| Sbjct 89851371 TTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCC 89851430 Query 1798 CACATGGTCTTCCCTGACCTTGAACCACCCTCTATGATGATGCTGA--GTGGTCTCTCCG 1855 ||||| || || |||| ||| ||| ||| |||||||| || ||| ||||||| || Sbjct 89851431 CACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTAT--TGACTTTGGTCTCATCG 89851488 Query 1856 GCCGCGCAGCGGCACCTCTCCCAAAATAGTCGTCCGCCCAGTCTTGCATCTCCTTGGGCA 1915 ||||||||||||| | ||||| || || ||||| | ||||| || | || | Sbjct 89851489 GCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTA 89851548 Query 1916 CGTTAGTGAA 1925 | |||||||| Sbjct 89851549 CATTAGTGAA 89851558 >seq11 Length=168460249 Score = 114 bits (126), Expect = 2e-22 Identities = 249/368 (68%), Gaps = 15/368 (4%) Strand=Plus/Minus Query 1561 CCAGGATTGCAAAGCACGATTGATGGGATGGATCCCGCCTTTAATTTGAACCGGCTTTCC 1620 || || ||||| |||| ||||| ||| ||| || ||||| | || ||||| || Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATG----CCTCCTTTGAAAAGACTTGGCTTGCC 165527548 Query 1621 GTATTTGCAGTTCGATTGCCAGTCCTTTTGAGC-CCAATCAATTCTTTCCAGTGCTTTAG 1679 ||||||||||| || ||||| | |||||| ||||| || |||||||||||| | | Sbjct 165527547 GTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGA- 165527489 Query 1680 CTTTAGATAGAGCGGTGCGATGTCATCTATCACGTTGTATTGGGCCAAATTCGAATAGAC 1739 || || | |||| |||||||| || | |||||| | || || || |||| Sbjct 165527488 ----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 165527434 Query 1740 CCTCGAATTGAAATCGAGGTGACCACTCAGGTAATTGTGGACCCCCAAGGCACGTGCCCA 1799 | ||| || | ||||||| | ||| || || ||||| | | |||||| Sbjct 165527433 TTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCA 165527374 Query 1800 CATGGTCTTCCCTGACCTTGAACCACCCTCTATGATGATGCTGAGT--GGTCTCTCCGGC 1857 ||| || || | || ||| ||| ||| | |||||| || ||| | |||||| |||| Sbjct 165527373 CATTGTTTTGCTTGTCCTGGAATTACCTTTTATGAT--TGTTGACTTTGGTCTCATCGGC 165527316 Query 1858 CGCGCAGCGGCACCTCTCCCAAAATAGTCGTCCGCCCAGTCTTGCATCTCCTTGGGCACG 1917 ||||||||||| | ||||| || || ||||| ||||||| || | || || Sbjct 165527315 CGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACA 165527256 Query 1918 TTAGTGAA 1925 |||||||| Sbjct 165527255 TTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8326264820896