Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031455.1 Length=2654 Score E Sequences producing significant alignments: (Bits) Value seq11 113 8e-22 seq13 111 3e-21 >seq11 Length=168460249 Score = 113 bits (124), Expect = 8e-22 Identities = 248/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1579 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTT 1638 ||| |||| || ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1639 CCGTATTTGCAATTTGACTGCCAGTCTCTTTGGGACCCGAGGAGCTCTTTCCAGTGCTTT 1698 ||||||||||| | |||||||| | || ||| | || | | ||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1699 AGCTTTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATACTCAGCCTCGTTGGAAAAG 1758 || | | ||| || || || | |||||| |||| ||| || ||||| | ||| || ||| Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1759 ACCCTGGAATTGAAATCCAGGTGTCCACTGAGATAATTGTGGGACCCTAAAGCACGTGCC 1818 || | ||| |||| || |||| | || || || || |||| | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1819 CACATCGTCTTCCCCGTTCGACTGTCACCTTCGACGATGAT--ACTAACAGGCCTGACAG 1876 ||||| || || | || | | ||||| | ||| | ||| || || | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1877 GCCGCGCAGCGGCATCTCTCGCAAAATAGTCATCGGCCCACTCCTGCATCTCGTCCGGGA 1936 ||||||||||||| | | |||| || ||| ||||| || |||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1937 CGTTAGTGAA 1946 | |||||||| Sbjct 165527257 CATTAGTGAA 165527248 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 247/368 (67%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1583 CTCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGT 1642 |||| || ||||| || | ||||| ||| || |||||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1643 ATTTGCAATTTGACTGCCAGTCTCTTTGGGACCCGAGGAGCTCTTTCCAGTGCTTTAGCT 1702 ||||||| || |||||||| | | ||| | || | | ||||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1703 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATACTCAGCCTCGTTGGAAAAGAC-- 1760 | | ||| || || || | |||||| |||| ||| || ||| | ||||| || ||||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1761 CCTGGAATTGAAATCCAGGTGTCCACTGAGATAATTGTGGGACCCTAAAGCACGTGCCCA 1820 | |||| |||| || |||| | || || || || |||| | |||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1821 CATCGTCTTCCCCGTTCGACTGTCACCTTCGACGATGAT--ACTAACAGGCCTGACAGGC 1878 ||| || || || || | |||| ||| | ||| || ||| || || | ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1879 CGCGCAGCGGCATCTCTCGCAAAATAGTCATCGGCCCACTCCTGCATCTCGTCCGGGACG 1938 ||||||||||| | | |||| || ||| ||||| | |||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1939 TTAGTGAA 1946 |||||||| Sbjct 89851551 TTAGTGAA 89851558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8383863885760