Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031456.1 Length=2692 Score E Sequences producing significant alignments: (Bits) Value seq16 168 1e-38 seq13 156 7e-35 seq11 134 2e-28 >seq16 Length=188620566 Score = 168 bits (186), Expect = 1e-38 Identities = 242/339 (71%), Gaps = 13/339 (4%) Strand=Plus/Minus Query 1673 CTTTAATTTGAACAGGCTTTCCGTACTTACAGTTGGACTGCCAGTCTTTTTGAGCACCTA 1732 |||| || ||||| || |||| |||||| || || | ||||||||| |||| ||||| | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1733 TCAATTCCTTCCAGTGCTTTAACTTTAGATATTGCGGACTGACATCATCGATGATGACGT 1792 |||||||||||||| ||||| | |||| || | || | ||| || | ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAA---CGT 2249223 Query 1793 TATACTCCACTTCGTTGGAGTAAACACGAGAATTGAAGTCCAGGTGTCCACTGAGATAAT 1852 |||| ||||| ||||| ||| |||| || ||| ||||| | | ||||| | ||||| Sbjct 2249222 TATATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAAT 2249163 Query 1853 TATGTAGGCCCAAAGCACGAGCCCACATTGTTTTACCTGTTCGAGAATCACCTTCTATGA 1912 ||||| ||||| | | ||||||||||| || || |||| ||||||||||| || | Sbjct 2249162 TATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTA 2249103 Query 1913 TAAT--ACTGACAGGCCTACAAGGCCGCGCAGCGGCACTGGTCCCAAAATACTCATCGGC 1970 | || |||| ||| || | || || | |||| || |||||| ||||| || Sbjct 2249102 TTATTGACTG--AGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGC 2249045 Query 1971 CCATTCTTGCATCTCCTCTGGGACGTTAGTGAAGGAGGA 2009 ||||| |||||| | | ||| ||||| ||||| || || Sbjct 2249044 CCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 156 bits (172), Expect = 7e-35 Identities = 262/373 (70%), Gaps = 17/373 (5%) Strand=Plus/Plus Query 1637 CTCCAGGATTGCAAAGCACGATTGAAGGAATTCCGCCTTTAATTTGAACAGGCTTTCCGT 1696 |||| || ||||| || | ||||| || || || ||||| | || ||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1697 ACTTACAGTTGGACTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAGTGCTTTAACT 1756 | || ||||| |||||||| | || |||||| || || || || ||||||||||| || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA-- 89851316 Query 1757 TTAGATATTGCGGACTGACATCATCGATGATGACGTTATACTCCACTTCGTTGGAGTAAA 1816 ||||| || | ||||||||||| ||| || || || ||||| ||| | | Sbjct 89851317 ----GTATTGTGGTGGTATGTCATCGATGAT---GTTGTAATCAACGTCGTTTGAGAAGA 89851369 Query 1817 C--ACGAGAATTGAAGTCCAGGTGTCCACTGAGATAATTATGTAGGCCCAAAGCACGAGC 1874 | |||| ||||| || |||| | || |||||| ||||||| | || Sbjct 89851370 CTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGC 89851429 Query 1875 CCACATTGTTTTACCTGTTCGAGAATCACCTTCTATGATAATACTGAC--AGGCCTACAA 1932 |||||||||||||||||| | ||||||| ||||||||| || |||| || || Sbjct 89851430 CCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGAT--TATTGACTTTGGTCTCATC 89851487 Query 1933 GGCCGCGCAGCGGC-ACTGGTCCCAAAATACTCATCGGCCCATTCTTGCATCTCCTCTGG 1991 |||||||||||||| | || ||||| || ||| ||||||| ||||| || ||||| Sbjct 89851488 GGCCGCGCAGCGGCTTGTAGT-CCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGG 89851546 Query 1992 GACGTTAGTGAAG 2004 || ||||||||| Sbjct 89851547 TACATTAGTGAAG 89851559 Score = 95.1 bits (104), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 1825 TTGAAGTCCAGGTGTCCACTGAGATAATTATGTAGGCCCAAAGCACGAGCCCACATTGTT 1884 |||| ||||| || |||| | || |||||| |||| | | |||||||||||| Sbjct 172133951 TTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTT 172134009 Query 1885 TTACCTGTTCGAGAATCACCTTCTATGATAATACTGAC--AGGCCTACAAGGCCGCGCAG 1942 || ||||||| |||| |||||||||||| ||||||| || || ||||| |||| Sbjct 172134010 TTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAG 172134067 Query 1943 CGGCACTGGTCCCAAAATACTCATCGGCCCATTCTTGCATCTCCTCTGGGACGTTAGTGA 2002 |||| | ||||| || ||| ||||||||||||| || ||| | || ||||||| Sbjct 172134068 CGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGA 172134127 Query 2003 AG 2004 || Sbjct 172134128 AG 172134129 >seq11 Length=168460249 Score = 134 bits (148), Expect = 2e-28 Identities = 259/376 (69%), Gaps = 17/376 (5%) Strand=Plus/Minus Query 1633 CCCTCTCCAGGATTGCAAAGCACGATTGAAGGAATTCCGCCTTTAATTTGAACAGGCTTT 1692 ||| |||| || ||||| |||| ||||| || || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1693 CCGTACTTACAGTTGGACTGCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAGTGCTTT 1752 ||||| || |||| |||||||| | | |||||| || || || || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1753 AACTTTAGATATTGCGGACTGACATCATCGATGATGACGTTATACTCCACTTCGTTGGAG 1812 || | | | | | || || |||||||||||| || || || | | ||| ||| Sbjct 165527489 AAGTATTG---TGGTGGTATG---TCATCGATGATG---TTGTAGTCAGCGTTGTTTGAG 165527439 Query 1813 TAAACACGAGAATTGAAGTCCAGGTGTCCACTGAGATAATTATGTAGGCCCAAAGCACGA 1872 | || ||| ||||| || |||| | || |||||| ||||||| | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1873 GCCCACATTGTTTTACCTGTTCGAGAATCACCTTCTATGATAATACTGACA--GGCCTAC 1930 |||||||||||||| | ||| | |||| ||||| |||||| | |||| || || Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCA 165527321 Query 1931 AAGGCCGCGCAGCGGCACTGGTC--CCAAAATACTCATCGGCCCATTCTTGCATCTCCTC 1988 |||||||||||||| | || ||||| || ||| ||||||||||||| || || Sbjct 165527320 TCGGCCGCGCAGCGGC--TTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTC 165527263 Query 1989 TGGGACGTTAGTGAAG 2004 ||| || ||||||||| Sbjct 165527262 TGGTACATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8505461911584