Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031458.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq13 158 2e-35 seq11 145 1e-31 >seq13 Length=197258317 Score = 158 bits (174), Expect = 2e-35 Identities = 257/366 (70%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1549 CCAGGATTGCAAAGCACGATTGATGGGATTCCCCCTTTAATTTGAACTGGCTTTCCGTAT 1608 || || ||||| || | ||||| ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1609 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1668 ||||| || |||||||| | | || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1669 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCTT 1728 || ||||| |||| | |||||| |||| ||| || || || ||||| || ||||| || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1729 GGGT--TGAAGTCTAGATGTCCACTAAGGTAATTATGTGGGCCTAGGGCACGAGCCCACA 1786 | ||| ||| | ||| |||| | ||| |||||| || | | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1787 TCGTCTTCCCTGTCCTCGAGTCACCTTCTACTATGATACTCACTGGTCTCTCCGGCCGCG 1846 | || || |||||||| || |||| ||||| || || | ||||||| |||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1847 CAGCGGAACTCCT--TCCAAAATATTCGTCCGCCCATGCTTGCATCTCGTCTGGAACTCT 1904 |||||| || | |||||| ||| || |||||| ||||| || ||||| || | Sbjct 89851495 CAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1905 AGTGAA 1910 |||||| Sbjct 89851553 AGTGAA 89851558 >seq11 Length=168460249 Score = 145 bits (160), Expect = 1e-31 Identities = 259/373 (69%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 1542 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCCCCTTTAATTTGAACTGGCTT 1601 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1602 TCCGTATTTGCAATTTGACTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCTTTCCAGTGC 1659 ||||||||||| | |||||||| | ||| || || || | || |||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGC 165527493 Query 1660 TTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAA 1719 | | || ||||| |||| | |||||| |||| ||| || || | | ||| || Sbjct 165527492 ATGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1720 TAGACTCTTGGGTTGAAGTCTAGATGTCCACTAAGGTAATTATGTGGGCCTAGGGCACGA 1779 ||||| || |||| ||| | ||| |||| | ||| |||||| || | | | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1780 GCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCTACTATGATACTCACTGGTCTCTCC 1839 |||||||| || || | |||||| || | ||||| || || | | ||||||| | Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATC 165527319 Query 1840 GGCCGCGCAGCGGAACTCCT--TCCAAAATATTCGTCCGCCCATGCTTGCATCTCGTCTG 1897 ||||||||||||| || | ||||| ||| || |||||| |||||| || |||| Sbjct 165527318 GGCCGCGCAGCGG--CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 1898 GAACTCTAGTGAA 1910 | || ||||||| Sbjct 165527260 GTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8239866223600