Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031466.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq13 102 1e-18 seq11 96.9 6e-17 seq16 91.5 3e-15 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 209/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1685 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1744 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1745 CTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATAAATTCTTTAAAATGCTTTAGGTA 1804 || ||| ||||| | ||| || || ||||| ||||| | ||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1805 --GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAGACTTTTGGG 1862 |||| ||| | |||||| |||| |||||| | || || | |||||||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1863 C--TCAGGTCCAGATGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTG 1920 | ||||||| ||| ||||||| || || ||| || ||||| || |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1921 TCTTCCCTGTACGACTCTCGCCCTCTATGACAAT--ACTTTTAGGTCTCCATGGCCGCGC 1978 | || ||||| | || | ||||||| || ||||| |||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1979 AGCGGC 1984 |||||| Sbjct 89851496 AGCGGC 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 206/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1685 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1744 |||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1745 CTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATAAATTCTTTAAAATGCTTTAGGTA 1804 || || ||||| | | ||| || || ||||| ||||| | ||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1805 --GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAGACTTTTGGG 1862 |||| ||| | |||||| |||| |||||| || | || | |||||||| | Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1863 CTCAGGTCCAGATGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTC 1922 | |||||| ||| ||||||| || || ||| || ||||| || ||||||||||| Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1923 TTCCCTGTACGACTCTCGCCCTCTATGACAAT--ACTTTTAGGTCTCCATGGCCGCGCAG 1980 || | ||| | | || | ||||| | ||||| |||||| |||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAG 165527309 Query 1981 CGGC 1984 |||| Sbjct 165527308 CGGC 165527305 >seq16 Length=188620566 Score = 91.5 bits (100), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1720 CTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCA 1779 |||| || |||| || || | |||||| || ||||||||| |||||||| || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1780 TAAATTCTTTAAAATGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTA--CCA 1837 ||||| || | || |||| | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1838 GGCATCATTACTGTAGACTTTTGGGCTCAGGTCCAGATGTCCACATAAATAATTGTGTGG 1897 |||| ||| | | || | || ||| ||| | || |||| ||||||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1898 GCCTAAAGACCTGGCCCACATTGTCTTCCCTGT 1930 || || || || |||||||||||||| || || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719858430800