Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031754.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq13 129 1e-26 seq16 118 2e-23 seq11 118 2e-23 >seq13 Length=197258317 Score = 129 bits (142), Expect = 1e-26 Identities = 213/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1670 CCTGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1729 ||||| ||||| || | ||||||||||||||| ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1730 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGGAAG 1789 || ||| || ||||| | ||| || || || || ||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1790 TGCGGATCGACGTCATCAATGACGTTATACCATGCGTCGTTACTGTATAC-TTTTGGGCT 1848 || || | |||||| |||| ||| || ||||||| | | || |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1849 T-AGATCTAAATGCCCACATAAATAGTTATGTGGACCTATAGACCTAGCCCACATTGTTT 1907 | || || | ||| ||||||| ||||||||| || | ||| || ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1908 TCCCGGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGTGGCCGCGCAGC 1965 | || || | ||| | || || | ||| ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1966 GGC 1968 ||| Sbjct 89851499 GGC 89851501 >seq16 Length=188620566 Score = 118 bits (130), Expect = 2e-23 Identities = 190/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 1704 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1763 |||| || ||||| || || | |||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1764 TGAATTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCATCAATGACGTTATA--CCA 1821 ||||| || |||| || | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1822 TGCGTCGTTACTGTATACTTTTGGGCTTAGATCTAAATGCCCACATAAATAGTTATGTGG 1881 | |||||| | | || | || | | ||||||| |||| |||||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1882 ACCTATAGACCTAGCCCACATTGTTTTCCCGGTACGACTATCTCCCTCAATTACTATACT 1941 || | || || ||||||||||| || ||||| | ||| || ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1942 TTGAGGTCTCAGTGGCCGCGCAGCGGCGTCG 1972 |||||||||| ||| || | |||| |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCGCTGTCG 2249065 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 208/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1670 CCTGGATTGCAGAGGAAGATTGTTGGTATGCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1729 ||||| ||||| || | ||||||||||||||| ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1730 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGGAAG 1789 || || || ||||| | | ||| || || || || ||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1790 TGCGGATCGACGTCATCAATGACGTTATACCATGCGTCGTTACTGTATACTTTTGGGCTT 1849 || || | |||||| |||| ||| || |||| ||| | | |||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1850 AGATCTAAATGCCCACATAAATAGTTATGTGGACCTATAGACCTAGCCCACATTGTTTTC 1909 | || | ||| ||||||| ||||||||| || | ||| || |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1910 CCGGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGTGGCCGCGCAGCGG 1967 | || | || || | || | | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1968 C 1968 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652659521792