Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031760.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-15 >seq13 Length=197258317 Score = 91.5 bits (100), Expect = 3e-15 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 2250 TCTGAAATTGCCCCCAGTCGAGAATGTCCCCGTCCTTCTCGATGTAGGATTTGACGTCGG 2309 ||||||| ||||||||||| | || ||||| |||| ||||| | |||| | Sbjct 172134341 TCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGA 172134400 Query 2310 AGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCA 2369 | ||||||||||| |||||||| ||||| || | | ||| | ||||| | Sbjct 172134401 AACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGA 172134460 Query 2370 AGTCGAAGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACTGGATGAGAACATGCA 2429 ||| ||||||| ||| || || ||||||||| ||| | ||| || | |||||| | Sbjct 172134461 GGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAA 172134520 Query 2430 AGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATATAtttttttGA 2484 ||||| | | |||||||| || ||| ||||||| |||||| | |||| Sbjct 172134521 GATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGA 172134575 Score = 89.7 bits (98), Expect = 9e-15 Identities = 206/305 (68%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1684 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1743 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1744 TTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTA 1803 ||| || || ||||| | | ||| || || || |||||||| ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1804 ATGCGGGGTCGAGTCATCAATGACGTTA-AACCAGGCGTCGTTACTGTATACCCTTGGGC 1862 || || | |||||| |||| ||| || || ||||||| | | || || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAA-CGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1863 --TCAGATCTAGATGTCCACACAGATAATTATGTGGACCTAATGATCTGGCCCACATCGT 1920 | || || | ||| ||||| | || |||||| || || ||||| |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1921 CTTCCCCGTACGACTATCTCCTTCAATCACTAT--ACTTTGAGGTCTGTGTGGCCGCGCA 1978 || || || | ||| | ||| || | ||| |||||| |||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTG--GTCTCATCGGCCGCGCA 89851496 Query 1979 GCGGC 1983 ||||| Sbjct 89851497 GCGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700658742512