Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031764.1 Length=2600 Score E Sequences producing significant alignments: (Bits) Value seq13 140 5e-30 seq16 136 6e-29 seq11 129 1e-26 seq9 105 1e-19 >seq13 Length=197258317 Score = 140 bits (154), Expect = 5e-30 Identities = 267/387 (69%), Gaps = 16/387 (4%) Strand=Plus/Plus Query 1544 CCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTAC 1603 || || ||||| || | ||||| ||| || || ||||| | ||| |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1604 TTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTT 1663 ||||| || |||||||| | | |||||| || || || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1664 AGATAGTGCGGTGCGACGTCATCTATTACGTTATACTCCACTTCGTCTGAGAAAAC--CC 1721 || || || |||| | |||||| || | ||| || || || |||| |||||| || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1722 GGGAATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGCCCACA 1781 |||| ||| | || |||| | || |||||| || || | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1782 TCGTCTTCCCCGTCCTAGAATCACCTTCGACGATGAT--ACTAATAGGTCTTTCCGGCCG 1839 | || || || ||||| ||||||| ||| | ||| || ||| | ||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1840 CGCAGCTGGACTCAAAG--AAAAATAACTATCTGCCCACTCTTGCATCTCGTCGGGCACG 1897 |||||| | || || ||| || ||||||||| | ||||| || || || || Sbjct 89851493 CGCAGC--GGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1898 TTAGTGAAGGAGGAGAGTGGAAACGGA 1924 ||||||||| || | ||| || ||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGA 89851577 >seq16 Length=188620566 Score = 136 bits (150), Expect = 6e-29 Identities = 238/338 (70%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 1578 CTTTAATAAGGACTGGCTTACCGTACTTGCAATTTGACTGCCACATCT-TTTGAGCCCCT 1636 |||| || | || || || | ||||||||| |||| ||||| ||| |||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAG-TCTCTTTGTGCACCA 2249275 Query 1637 ATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCTATTACGTTA 1696 | ||||| |||||||| |||| | || ||| | | |||| ||| || |||||| Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTA 2249221 Query 1697 TACTCCACTTCGTCTGAGAAAACCCGGGAATTGAAGTCTAGGTGTCCACTGAGATAATTA 1756 || ||||| |||| ||||||||| | ||| ||||||| | ||||| | ||||||| Sbjct 2249220 TATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTA 2249161 Query 1757 TGTGGGCCTAACGCACGTGCCCACATCGTCTTCCCCGTCCTAGAATCACCTTCGACGATG 1816 ||| || || | | ||||||||| ||||| || || || ||||||||||| | || Sbjct 2249160 TGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 1817 AT--ACTAATAGGTCTTTCCGGCCGCGCAGCTGGACTC-AAAGAAAAATAACTATCTGCC 1873 || ||| |||||| || || | ||| | || | ||||||||| ||||||| Sbjct 2249100 ATTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCC 2249044 Query 1874 CACTCTTGCATCTCGTCGGGCACGTTAGTGAAGGAGGA 1911 || | |||||| | | || ||||| ||||| || || Sbjct 2249043 CATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 129 bits (142), Expect = 1e-26 Identities = 256/374 (68%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 1537 ACCCTCACCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTT 1596 |||| | || || ||||| |||| ||||| ||| || || ||||| | ||| |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1597 ACCGTACTTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTT 1656 ||||| ||||| | |||||||| | |||||| || || || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1657 TAGCTTTAGATAGTGCGGTGCGACGTCATCTATTACGTTATACTCCACTTCGTCTGAGAA 1716 | || || || |||| | |||||| || | ||| || || | | || |||||| Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1717 AACCCGGGAATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGC 1776 || ||| ||| | || |||| | || |||||| || || | | ||| Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1777 CCACATCGTCTTCCCCGTCCTAGAATCACCTTCGACGATGAT--ACTAATAGGTCTTTCC 1834 |||||| || || | ||||| |||| ||||| | ||| | ||| | ||||| | Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATC 165527319 Query 1835 GGCCGCGCAGCTGGACTCAAAGA--AAAATAACTATCTGCCCACTCTTGCATCTCGTCGG 1892 ||||||||||| | || ||| ||| || ||||||||| ||||||| || || | Sbjct 165527318 GGCCGCGCAGC--GGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 1893 GCACGTTAGTGAAG 1906 | || ||||||||| Sbjct 165527260 GTACATTAGTGAAG 165527247 >seq9 Length=209865144 Score = 105 bits (116), Expect = 1e-19 Identities = 165/230 (72%), Gaps = 17/230 (7%) Strand=Plus/Plus Query 1121 TGTCCAGACTTGGAAGTTCAGGTAAGCTTTGTGGAGATGCAAC-GCTCTCCTCAGGTTGT 1179 |||||| | || |||||||||||| || ||||| |||| || | ||| | ||||||||| Sbjct 1759648 TGTCCATATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGCTGCT-TTCTCAGGTTGC 1759706 Query 1180 GGTTGAACCGTATTTGCA-CGTGATATA--CCCTGGTCATCGTATA------TCGCAGGT 1230 ||||||||||||||||| |||| || || || |||| || | | |||||| Sbjct 1759707 TGTTGAACCGTATTTGCAGTTTGATGTAGTCCGTGTCCATCATACACGGTCGTTGCAGGT 1759766 Query 1231 CCTCTACTTGAATTATCTTGAAATATAGGGGATTTTCTATCTCCCAGATATACACGCCAT 1290 || ||||| | ||||| || || |||||| |||| | ||| || || |||| Sbjct 1759767 --GCTTCTTGACT----TTGAAGTAGAGAGGATTTGATATCCCGTAGAAGTAAACTCCAT 1759820 Query 1291 TCTCTGCCTGACGTGCAGTGATGAACTCCCCTGTGCGTGAATCCATGTCC 1340 | | || || |||||||||| |||| || |||| | |||||||| || Sbjct 1759821 TTTGGGCTTGCTGTGCAGTGATTAACTTGCCGGTGCATAAATCCATGGCC 1759870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8211066691168