Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_032006.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq11 158 2e-35 seq16 152 9e-34 seq13 149 1e-32 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 277/400 (69%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1560 CCCTCTCCTGGATTGCAGAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTT 1619 ||| ||||||| ||||| |||| ||||| ||| ||||| ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1620 CCGTATTTGCAGTTTGATTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGCTTC 1679 ||||||||||||| || ||||| | ||||| || ||||| | ||||||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1680 ATCTTTAGATATTGCGGTGTGACGTCATCAATGACGTTGTACTCCGCTTCGTTTGAGTAA 1739 | || ||||| |||| | |||||| |||| |||||| || || | ||||||| | Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1740 ACCCTAGAATTAAAATCAAGGTGTCCACTTAAATAGTTATGTGGGCCTAATACACGCGCC 1799 || | || || | || |||| || ||||||||| || || | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1800 CACATCGTCTTCCCCGTCCTTGAGTCACCCTCGATGATTAT--ACTAATAGGTCTCTCCG 1857 ||||| || || | ||||| || | ||| | |||||| | ||| | |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1858 GCCGCGCAGCGGGATCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAA 1917 |||||||||||| | |||||| || ||| ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1918 CCTCTGTAAAGGAGGAGAGGGGAAACGGAGGAACCCATGG 1957 | | || ||| || | || || ||| |||||||| Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGG 165527218 >seq16 Length=188620566 Score = 152 bits (168), Expect = 9e-34 Identities = 220/309 (71%), Gaps = 10/309 (3%) Strand=Plus/Minus Query 1600 CTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCGTTGGGCCCCAA 1659 |||| || ||||| || |||| ||| ||||| |||| ||||||||| | ||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1660 TGAGCTCTTTCCAATGCTTCATCTTTAGATATTGCGGTGTGACGTCATCAATGACGTTGT 1719 | || ||||| || || || | |||| || | |||| |||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1720 ACTCCGCTTCGTTTGAGTAAACCCTAGAATTAAAATCAAGGTGTCCACTTAAATAGTTAT 1779 | ||| | ||||| ||| ||||| ||| ||| || || | | ||||||||||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1780 GTGGGCCTAATACACGCGCCCACATCGTCTTCCCCGTCCTTGAGTCACCCTCGATGATTA 1839 || || ||| | |||||||| ||||| || || ||||| ||||| || || |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1840 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGGATCCCTACCAAAATAATCATCAGCCCA 1897 | ||| ||||||| || || | |||| || |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1898 CTCTTGCAT 1906 | |||||| Sbjct 2249041 TTTTTGCAT 2249033 >seq13 Length=197258317 Score = 149 bits (164), Expect = 1e-32 Identities = 251/359 (70%), Gaps = 12/359 (3%) Strand=Plus/Plus Query 1564 CTCCTGGATTGCAGAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGT 1623 ||||||| ||||| || | ||||| ||| ||||| ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1624 ATTTGCAGTTTGATTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGCTTCATCT 1683 |||||||||| || ||||| | |||| || ||||| | ||||||||| ||||| | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA--- 89851315 Query 1684 TTAGATATTGCGGTGTGACGTCATCAATGACGTTGTACTCCGCTTCGTTTGAGTAAAC-- 1741 || ||||| |||| | |||||| |||| |||||| || | ||||||||| | || Sbjct 89851316 --AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1742 CCTAGAATTAAAATCAAGGTGTCCACTTAAATAGTTATGTGGGCCTAATACACGCGCCCA 1801 | || | || | || |||| || ||||||||| || || | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1802 CATCGTCTTCCCCGTCCTTGAGTCACCCTCGATGATTAT--ACTAATAGGTCTCTCCGGC 1859 ||| || || || ||||| || |||| || |||||||| ||| | |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1860 CGCGCAGCGGGATCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAAC 1918 |||||||||| | ||||| || ||| ||||| | ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTAC 89851549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313465028704