Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_032118.1 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq16 91.5 3e-15 seq13 82.4 1e-12 >seq16 Length=188620566 Score = 91.5 bits (100), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 1787 CTTTAATTTGAATTGGTTTCCCGTACTT-CGTGTTGCTTTGCCAGTCTCGTTGGGCCCCC 1845 |||| || |||| ||||| | |||||| | |||||| ||||||||| ||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1846 ATGAATTCCTTGAAATGTTTCAAATAATGAGGGTCAACATCGTCAATGATATTAAA--CC 1903 | |||||||| | ||||| ||| | || |||| ||| | ||||| | ||| | || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1904 AGGCATCATTTGAATATATTTTAGGGCTTAGATCCAGATGTCCACATAAATAGTTATGAG 1963 | |||| || || | | |||| | | || | || |||| |||||| ||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1964 GACCTAAGGAACGTGCCCATAATGTTTTTCCAGTACGTGAATCACCTTCTAATACTA 2020 || || || | |||||| | ||| ||||| || | |||||||||||| | || || Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 >seq13 Length=197258317 Score = 82.4 bits (90), Expect = 1e-12 Identities = 205/304 (67%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 1753 CCCGGATTGCACAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAATTGGTTTCCCGTAC 1812 || || ||||| || | ||||||||| || || ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1813 TTCGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTGAAATGTTTCAAATAA 1872 || ||| ||||| | | |||| || || || || || || | || || || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1873 TGAGGGTCAACATCGTCAATGATATTA-AACCAGGCATCATTTGAATATA-TTTTAGGGC 1930 || || | || || ||||| || || || | || ||||| | | |||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAA-CGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1931 TT-AGATCCAGATGTCCACATAAATAGTTATGAGGACCTAAGGAACGTGCCCATAATGTT 1989 || || |||| ||| ||||||| |||||||| || || || | |||||| | |||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1990 TTTCCAGTACGTGAATCACCTTCTAATACTAA--ACTTAAGGGCCTTATTGGCCGCGCAG 2047 || || || | ||||||| ||||| | || |||| || || || |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 2048 CGGC 2051 |||| Sbjct 89851498 CGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8819052609120