Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_033334.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 3e-14 seq13 78.8 2e-11 seq11 77.0 6e-11 >seq16 Length=188620566 Score = 87.8 bits (96), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 1739 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCA 1798 |||| || ||||| || |||| ||| || || || ||||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1799 TAAATTCTTTAAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATA--CCA 1856 ||||| || |||| |||| |||| ||||| |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1857 AGCACTGTTGCTATACACTTTTGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGG 1916 || ||| | || | ||| ||||||| | | |||| ||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1917 ACCTAATGACCGAGCCCATACTGTTTTTCCTATTCT 1952 || ||||| | ||||| | ||| ||||| |||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCT 2249120 >seq13 Length=197258317 Score = 78.8 bits (86), Expect = 2e-11 Identities = 212/317 (67%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 1691 ATGAAGACCCTTCTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAA 1750 ||||| | || ||||||| ||||| || | ||| || || || || ||||| | || Sbjct 89851187 ATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGAC 89851246 Query 1751 CTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATAAATTCTTTAA 1810 |||||| ||||||| ||||| ||||| | | || || || ||||| ||||| Sbjct 89851247 TTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCC 89851306 Query 1811 AGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATAC-CAAGCACTGTTGCTA 1869 ||||||| | |||||| || | |||||| |||| ||| || ||| | ||| | Sbjct 89851307 AGTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1870 TACACTTTTGGAC--TCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACC 1927 | |||||| | | ||||| || ||||| | || ||||| || || || | Sbjct 89851367 -AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATC 89851425 Query 1928 GAGCCCATACTGTTTTTCCTATTCTACTTGGGCCTTCTATAACTAT--ACTTATGGGCCT 1985 ||||| | |||||| ||| | || | |||||| | ||| |||| ||| | Sbjct 89851426 TTGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT-TGGTCTC 89851484 Query 1986 ATCCGGCCGCGCAGCGG 2002 ||| ||||||||||||| Sbjct 89851485 ATC-GGCCGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 77.0 bits (84), Expect = 6e-11 Identities = 213/318 (67%), Gaps = 13/318 (4%) Strand=Plus/Minus Query 1691 ATGAAGACCCTTCTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAA 1750 ||||| |||| ||||||| ||||| || | ||| || || || || ||||| | || Sbjct 165527616 ATGAAAACCCA-CTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGAC 165527558 Query 1751 CTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCCTTC--TGGGCCCCCATAAATTCTTT 1808 |||||| |||||||| |||| ||||| | ||| || || || ||||| ||||| Sbjct 165527557 TTGGCTTGCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTT 165527500 Query 1809 AAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCT 1868 ||||| | | |||||| || | |||||| |||| ||| || ||| |||| Sbjct 165527499 CCAGTGCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGA 165527440 Query 1869 ATACACTTTTGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACCG 1928 | |||||| | ||||| || ||||| | || ||||| || || || | Sbjct 165527439 GAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCT 165527380 Query 1929 AGCCCATACTGTTTTTCCTATTCT--ACTTGGGCCTTCTATAACTAT--ACTTATGGGCC 1984 ||||| | |||||| | | | || | || |||| ||| | | | |||| ||| | Sbjct 165527379 TGCCCACATTGTTTTGCTTGTCCTGGAATTA--CCTTTTATGATTGTTGACTT-TGGTCT 165527323 Query 1985 TATCCGGCCGCGCAGCGG 2002 ||| ||||||||||||| Sbjct 165527322 CATC-GGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8787053143920