Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_033554.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq16 132 8e-28 seq13 93.3 7e-16 seq11 82.4 1e-12 >seq16 Length=188620566 Score = 132 bits (146), Expect = 8e-28 Identities = 193/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 1707 CTTTAATTTGAACTGGTTTCCCGTATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCA 1766 |||| || ||||| ||||| | ||| || || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1767 TGAACTCCTTAAAGTGTTTGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTA--CCA 1824 || ||||| ||||||| | | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1825 GGCGTCGTTACTGTAGACCTTGGGACTTAAGTCTAAGTGTCCACATAGATAGTTATGTGG 1884 | |||||| | | ||| | ||| | |||||||| | |||| || ||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1885 GCCTAGTGACCTAGCCCACATTGTCTTGCCGGTTCGACTGTCTCCCTCAATTACTATACT 1944 || | ||| || |||||||||||||| ||||||| || || ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1945 TTGAGGTCTCAGGGGCCGCGCAGCGGCGTCG 1975 |||||||||| || || | |||| |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCGCTGTCG 2249065 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1673 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTAT 1732 || || ||||| || | |||||| ||||| || ||||| | || ||| || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1733 TTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGTTTGAGGAAA 1792 || ||| || ||||| | ||| || || || ||||| || |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1793 TGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTAGACCTTGGGA-CT 1851 || || | |||||| |||| |||||| ||||||| | |||| || || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1852 TAAG-TCTAAGTGTCCACATAGATAGTTATGTGGGCCTAGTGACCTAGCCCACATTGTCT 1910 | || || | || ||||||| ||||||||| || | || || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1911 TGCCGGTTCGACTGTCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGC 1968 | || || | || | || || | ||| ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1969 GGC 1971 ||| Sbjct 89851499 GGC 89851501 Score = 84.2 bits (92), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 2238 TCTGAAACTCCCCCCATTCGAGAGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGG 2297 |||||||| |||||| |||| || ||||| || | ||||| |||| | Sbjct 172134341 TCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGA 172134400 Query 2298 AGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTATTTGGG-GATACC 2356 | ||||||||||| |||||||| |||||| || | | ||| |||||||| ||| Sbjct 172134401 AACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGAT-TG 172134459 Query 2357 AGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGC 2416 ||||| ||||||| |||| || || ||| ||||| || | ||| || | || || Sbjct 172134460 AGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGA 172134519 Query 2417 AGATGAGGTTCCCCATTTTCATGGAGTTCTCGGCAGAT 2454 |||||||| | | | ||| || |||||| |||||| Sbjct 172134520 AGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGAT 172134557 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 200/301 (66%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1673 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTAT 1732 || || ||||| || | |||||| ||||| || ||||| | || ||| || |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1733 TTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGTTTGAGGAAA 1792 || || || ||||| | | ||| || || || ||||| || |||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1793 TGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTAGACCTTGGGACTT 1852 || || | |||||| |||| |||||| |||| ||| | |||| || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1853 AAGTCTAAGTGTCCACATAGATAGTTATGTGGGCCTAGTGACCTAGCCCACATTGTCTTG 1912 ||| | || ||||||| ||||||||| || | || || ||||||||||| ||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1913 CCGGTTCGACTGTCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGCGG 1970 | || | | || | || | | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1971 C 1971 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652659521792