Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_033779.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-17 seq16 84.2 4e-13 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 2271 TCCCCATTCGAGTGTATCGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTT 2330 |||||| |||| | | || ||||| || | || || ||||| | | |||||||| Sbjct 89851781 TCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGAAACTGGATTT 89851840 Query 2331 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGG-GATACGAGGTCGAAGA 2389 ||| ||| || || ||||| || | | ||| | ||||| ||| || ||| |||| Sbjct 89851841 AGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGATT-GATGTCAAAGA 89851899 Query 2390 ATCTCTGATTTTGGCAGTTGAATTTTCCTT--CGAACTGCAGAAGCACATGTAAATGAGG 2447 |||| ||||||| || || |||||| || | | ||||| | ||||||| |||||| Sbjct 89851900 ATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACATGTAGATGAGG 89851959 Query 2448 TTCGCCATCTTCGTGCAACTCTCTGCAGAT 2477 || | ||||||||||| ||||||||||| Sbjct 89851960 TTTACTGTCTTCGTGCAATTCTCTGCAGAT 89851989 Score = 98.7 bits (108), Expect = 2e-17 Identities = 220/324 (68%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 2272 CCCCATTCGAGTGTATCGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTA 2331 ||||| |||| | ||| ||||| || | ||||| |||| | | ||||||||| Sbjct 172134352 CCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGAAACTGGATTTA 172134411 Query 2332 GCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGG-GATACGAGGTCGAAGAA 2390 || ||| |||| ||||| || | | ||| | ||||| ||| |||||| ||||| Sbjct 172134412 GCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGAT-TGAGGTCAAAGAA 172134470 Query 2391 TCTCTGATTTTGGCAGTTGAATTTTCCTTCGAACTGCAGAAGCACATGTAAATGAGGTTC 2450 ||| ||||||| || |||||||| ||| | ||||| | ||||| | |||||| | Sbjct 172134471 TCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAGATGAGGCTT 172134530 Query 2451 GCCATCTTCGTGCAACTCTCTGCAGATTTTAATGTAT-TTTTTATTTGTTG--GGGTTTG 2507 | | |||||||||| ||| ||||||| || ||| | || | | || || ||| Sbjct 172134531 GTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGATCGCTGAAGGAATTG 172134590 Query 2508 GAGTTTAAGT---AGTTGTTCGAGGGCTTCGTCTTTGGTTAGAGAACATTTTGGGAAAGT 2564 || || | |||||||| || | ||||||| || | | ||||||||| | || Sbjct 172134591 --GTAGAACTTTCAGTTGTTCAAGATAATATTCTTTGGATACATAGCATTTTGGGTATGT 172134648 Query 2565 AAGGAAATAATTTTTGGAATTAAC 2588 | ||| || || |||| ||| || Sbjct 172134649 GATGAAGTAGTTCTTGGCATTGAC 172134672 Score = 95.1 bits (104), Expect = 2e-16 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1696 CCTGGATTGCATAGAAAGATTGTGGGAATCCCGCCTTTAATTTGGATTGGTTTCCCGTAC 1755 ||||| |||||||| | |||||| || || || ||||| | | |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1756 TTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCATAAATTCCTTGAAGTGCTTTAGATAG 1815 || ||| ||||| | | |||| || || ||||| || || ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1816 TGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCATCGTTGCTGTAGACCTTTGGG- 1872 || || || |||||| |||| |||||| | ||| ||||| | |||| ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1873 CTT-AGGTCAAGGTGTCCACATAAGTAGTTATGTGGGCCTAGAGAACGGGCCCATATGGT 1931 ||| ||||| | || ||||||| |||||||||| || | ||| | ||||| || || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1932 CTTCCCGGTCCGGCTTTCTCCCTCAATGACAATACTGTTGGGCCTCCAGGGCCGCGCAGC 1991 || || |||| | || | || |||| || || || ||| ||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1992 GG 1993 || Sbjct 89851499 GG 89851500 >seq16 Length=188620566 Score = 84.2 bits (92), Expect = 4e-13 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 1730 CTTTAATTTGGATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCA 1789 |||| || || | ||||| | |||||| || ||||||||||| ||| ||||| | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1790 TAAATTCCTTGAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACG 1849 |||||||| |||| |||| | | || |||| |||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1850 CATCGTTGCTGTAGACCTTTGGGCTTAGGTCAAGGTGTCCACATAAGTAGTTATGTGGGC 1909 ||||||| | | ||| | || | | ||| | | |||| ||| || |||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1910 CTAGAGAACGGGCCCATATGGTCTTCCCGGT 1940 | | || | ||||| || ||||| ||||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796652983480