Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_021862.1 Length=8576 Score E Sequences producing significant alignments: (Bits) Value seq13017 123 1e-24 >seq13017 Length=1175 Score = 123 bits (136), Expect = 1e-24 Identities = 367/555 (66%), Gaps = 22/555 (4%) Strand=Plus/Plus Query 6808 CTCTTCGCGCTTGTCGATGCCCTGATAGCCGGCATCGCCGAACACGTCGGCCTCCTTGCC 6867 |||||||||| | |||| || || |||||||| | ||||| || || | ||| Sbjct 420 CTCTTCGCGCCTTTCGACACCGGTGTAACCGGCATCTGCATACACGGCGTTTTCTTCGCC 479 Query 6868 ATGCACCAATGCGTTGCGCTGGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCACTACGG 6927 ||||| || | | ||| ||| || ||| || ||||| || ||||| ||| Sbjct 480 ATGCAGCAGTTCAGCCACCTG-CGTGACATCGGCCACATTGGCAGCGGTGCCATGGACGT 538 Query 6928 TGTGCACCAGCCCCGAGTCCGCATCCACACCAATGTGCGCTTTCATGCCGAAATGCCACT 6987 |||||||| || || || |||| |||| |||||||| ||||| ||||| ||| Sbjct 539 GATGCACCAGGCCGGACTCGACATCGGCACCGATGTGCGCCTTCATCCCGAAGAAATACT 598 Query 6988 GGTTACCTTTCTTGGTCTGGTGCATCTCTGGGTCACGCTTGCCGCTGCCATTCTTGGTCG 7047 | ||||||||||||||||||||||| || ||||||||||| ||| ||||||| Sbjct 599 GACCGCCTTTCTTGGTCTGGTGCATCTCGGGATCACGCTTGCCTTCTTTATTTTTGGTCG 658 Query 7048 AACTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCACGTCTTTGAGCA--GGTAGC 7105 | ||||| || ||| | | ||| ||||| | |||| ||| | ||| | || Sbjct 659 AGCTGGGGGCATGAATAATGGTGGCATCGACGATGGTGC----CTTGGCGCAGCGACAGG 714 Query 7106 CCTTCGCACTG-AGTTGCGCGTTGACGGTCTGCAGAAATTGCTCG-GCTAACTGGTGTCG 7163 |||| ||| || | | |||| | | ||| ||||| | || | ||| || Sbjct 715 CCTTTTTCCTGCAGATAACCATTGA-TGACCGCAAGGATTGCCGGTGCGAGCTGATGCTT 773 Query 7164 CTCCAGCAAGTGCCGAAAGCGCAGAATGCTGACCCGGTCCGGCAGTCG---GCTTATGCC 7220 ||||||||||||||| ||| || || || || || | | | ||| | || Sbjct 774 CTCCAGCAAGTGCCGGAAGTTCATGATCGTGGTGTCTTCGGGGATTGGCGCGCTCA-GCG 832 Query 7221 TCCCAGCCCCGCGAATTGCCGATACAACGGC---ACGTCGTACAGCGCCTCTTCCATCGC 7277 | ||| ||||| || || || ||| | ||||| ||||| |||||||| || Sbjct 833 T--CAGGAGTGCGAACTGGCG---CATGGGCGTGATTTCGTAGAGCGCTTCTTCCATGGC 887 Query 7278 CACGTCCGTCAGCCCGAACCATTGCTGCAGAAAGTGGATGCGCAGCATCGTTTCGACTGG 7337 | ||| |||| |||||| | ||||| | |||||||||||||| ||||| | || Sbjct 888 CGGGTCGCTCAGGGAGAACCAGTTCTGCAACAGATGGATGCGCAGCATGGTTTCCAGAGG 947 Query 7338 AAACGGCTTCCGACC 7352 | | || || | ||| Sbjct 948 ATAGGGTTTTCTACC 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27287271578560