Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_000869.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq3069 100 5e-18 seq1694 87.8 3e-14 seq1129 86.0 1e-13 seq519 84.2 4e-13 >seq3069 Length=10854949 Score = 100 bits (110), Expect = 5e-18 Identities = 226/332 (68%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 1288 ATTACATTGTTTATACTAATCACGCCTAATCTATT-TAAATATTTATTACATTGATATTT 1346 || ||||| |||| |||||| || || ||| ||| ||||||||||||| ||| | Sbjct 3754264 ATAACATTATTTAAACTAATGACTCC-AATACATTCTAAATATTTATTAACATGAAAAGC 3754322 Query 1347 AAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAATGA-GTCCAGATTTTGCAGGCTA 1405 || | | | ||| | || ||| ||| ||| |||| |||||||| ||| | || Sbjct 3754323 AAGTCGTTCTCTGAATTGAGAAGTCGAAGG-TGTTAATGTCGTCCAGATCTTGAAAAATA 3754381 Query 1406 GAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGGATTTGTAACG 1465 | || || | ||| |||||||| |||||| ||||||| || || || | | Sbjct 3754382 TCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCT 3754441 Query 1466 TGATTATGTCGTGGTTCCTCTGGAATGGTCTC-TCTAGGTGCCTGGTTATCTTGAAATAT 1524 || |||||||||| | | ||||||||| ||| |||| | |||| |||||||||| Sbjct 3754442 CTATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCT-GGTGTCATGTTAACTTGAAATAT 3754500 Query 1525 AGGGGATTTTTGACCGTCCAGATATATACGCCACTCTCTGATTGAGTTGCAGTGAGTAGT 1584 ||||||||| || || ||||||||| || | | | | || | |||||| | Sbjct 3754501 AGGGGATTTGGTACTTCTCAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTT 3754560 Query 1585 TCCCCGGTGCGTGAATCCATTATTGTGACAAT 1616 | ||| ||||| ||| |||| || | |||| Sbjct 3754561 TTCCCAGTGCGAAAATACATTGTTCTTGCAAT 3754592 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1441 TTGTAGTTGAACTGGATTTGTAACGTGATTATGTCGTGGTTCCTCTGGAATGGTCTC-TC 1499 |||||||||||||| ||||| | | || ||||||||||| | | ||||||| || || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1500 TAGGTGCCTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCCAGATATATACGCCACT 1559 ||| || | |||||||||||||| || ||||| || ||| |||||||||| | Sbjct 596581 TAG-TGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1560 CTCTGATTGAGTTGCAGTGAGTAGTTCCCCGGTGCGTGAATCCAT 1604 | | ||| ||||||| ||||||| |||| ||||||| Sbjct 596522 GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 77.0 bits (84), Expect = 6e-11 Identities = 82/106 (77%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 1429 GCTTTCCTCAGGTTGTAGTTGAACTGGATTTGTAACGTGATTATGTCGTGGTTCCTCTGG 1488 |||||||| | || ||||||||||| || | | | || |||||| |||| | | | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1489 AATGGTCTC-TCTAGGTGCCTGGTTATCTTGAAATATAGGGGATTT 1533 ||||||||| ||| |||| | |||||||||||||| ||||||||| Sbjct 600172 AATGGTCTCCTCT-GGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 225/329 (68%), Gaps = 26/329 (8%) Strand=Plus/Minus Query 1288 ATTACATTGTTTATACTAATCACGCCTAATCTATT-TAAATATTTATTACATTGATATTT 1346 || ||||| |||| |||||| || | ||| ||| ||||||||||||| | ||| | | Sbjct 693918 ATAACATTATTTAAACTAATGACTAC-AATACATTCTAAATATTTATTAAAATGAAAATC 693860 Query 1347 AAATAC--TCTTAAGAAACGCGAGGTCTGAGGATGTAAATGA-GTCCAGATTTTGCAGGC 1403 ||| || ||| | || | || ||| ||| ||| |||| |||||||| || || Sbjct 693859 AAA-ACGTTCTCTA-AATTGAGAAGTCGAAGG-TGTTAATGTCGTCCAGATCTT-CA--- 693807 Query 1404 TAGAAAACATTTGTGTATCCCCAAC-------GCTTTCCTCAGGTTGTAGTTGAACTGGA 1456 |||||||| || | | || | |||||| | ||||||||||||||| | Sbjct 693806 ---AAAACATTCATGCCTTCTGAAATTGTAGGGTTTTCCTAAAGTTGTAGTTGAACTGTA 693750 Query 1457 TTTGTAACGTGATTATGTCGTGGTTCCTCTGGAATGGTCT-CTCTAGGTGCCTGGTTATC 1515 | || | | || |||| |||| | | | ||| ||||| |||| |||| |||||| Sbjct 693749 TCTGGATCTCTATGATGTTGTGGATGTTGTTGAACGGTCTCCTCT-GGTGTTGTGTTATC 693691 Query 1516 TTGAAATATAGGGGATTTTTGACCGTCCAGATATATACGCCACTCTCTGATTGAGTTGCA 1575 ||| |||| ||||| ||| || ||| ||||||||||| | | | | | ||| ||| Sbjct 693690 TTGTAATA-GGGGGAATTTAAACTTCCCAAGTATATACGCCATTATTTCACTAAGTCGCA 693632 Query 1576 GTGAGTAGTTCCCCGGTGCGTGAATCCAT 1604 |||| | | |||||| || ||||||| Sbjct 693631 ATGAG-ATATTCCCGGTACGAAAATCCAT 693604 >seq519 Length=3254320 Score = 84.2 bits (92), Expect = 4e-13 Identities = 332/509 (65%), Gaps = 25/509 (5%) Strand=Plus/Plus Query 2223 AAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACAAAA-TCTTTAGGGGC 2281 ||||| | | | ||||| ||||| ||||| ||| |||||| | ||| ||||| ||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTT-GGGTC 1743056 Query 2282 CTTTTCCCTCAGTATATTGAGGGCCGAAGCCTTGGACCCTGAATTGATTGCCTCGGCATA 2341 || || | | ||| | | | ||| | | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2342 TGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATTTGGAAAATTCC 2401 | | || | ||| || ||| ||||| ||||||||||| |||| |||||| | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTT-GAAAAT--C 1743173 Query 2402 ATGATCAAGC-AC---GTCTCCGTCTTTTTCCATGTATGCTTTAACAT---CTGTTGAGC 2454 || |||| | || |||||| || ||||| ||||||| |||||||| ||||| Sbjct 1743174 AT-CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA-- 1743230 Query 2455 TTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGG-GATGTGAGATCG 2513 ||||| |||| || ||||||| || | ||| | ||| ||| | | || Sbjct 1743231 -TTTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCA 1743288 Query 2514 AAGAATCGGTTATTTTGGCATTTGAATTTTCCTTCGAATTGGATGAGGAGATGCAGGTGA 2573 || |||| | ||| ||| |||||| ||| ||| ||||| || | ||||| || Sbjct 1743289 AAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGT 1743348 Query 2574 GGAGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATGATTAATTTATTAGTTGG--AG 2631 || ||| | || ||||| |||| | ||| |||| | | ||| || || || Sbjct 1743349 GGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAG 1743408 Query 2632 TTGATAGGTTTAATATTTGGGAGAGTGCTTCTTCTTCTTTGGTGAGTGAGCAGTGTGGGT 2691 |||| ||| | || | |||| | || ||||| ||||| || || |||| Sbjct 1743409 TTGAGGCTTTTGAGATGATGAAGAG-----CATCATCTTTTGTGAGGGAACATCTTGGGA 1743463 Query 2692 ATGTGAGGAAATAATTCTTGGCATTTATT 2720 | |||||||||| ||| ||| ||||||| Sbjct 1743464 AAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996