Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_000882.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq519 77.0 6e-11 >seq519 Length=3254320 Score = 77.0 bits (84), Expect = 6e-11 Identities = 237/362 (65%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 2227 CCCCTCGAGCCGATCTTCCATCGATCTGGAAAACCCCATGATCAAGAACGTCTCCGTTTT 2286 ||||| ||| ||||||||||| || || ||| | | ||| | |||||| | | Sbjct 1743142 CCCCT--AGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCT 1743199 Query 2287 TTGCGATATATTCTTTGACAT---CTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGA 2343 || |||| ||| ||| |||| ||||| ||||| |||| || |||||| Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGATGGA 1743256 Query 2344 AATGTGCTGACCTGGTTGGG-GATGTGAGGTCGAAGAATCGTGGATTTTTGCATTGGAAT 2402 | || | ||| | ||| ||| | | ||| || |||| | |||| |||| |||| Sbjct 1743257 ATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAAT 1743315 Query 2403 TTACCTTCGAATTGGATGAGGATATGCAAGTGAGGAGTCCCATCTTCGTGCAATTCCCTG 2462 |||||| ||| ||||| || | |||||| || || ||| | ||| | ||| || Sbjct 1743316 TTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTG 1743375 Query 2463 CAAATCCTGATAAATAGTTTAATTGTAGGGGTTTCTATGGCTTGGATTTGGGAAAGTGCT 2522 || | || || ||| | | |||||||| | | | || || || ||| || Sbjct 1743376 CACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCA 1743435 Query 2523 TCTTCTTTAGTGAGAGAGCAATGTGGGTATGTGAGGAAATAGTTTTTCGCATTTATTCTT 2582 || ||||| ||||| || || |||| | |||||||||| ||||| ||||||||| Sbjct 1743436 TCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTA 1743495 Query 2583 AA 2584 || Sbjct 1743496 AA 1743497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671685065480