Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001359.1 Length=2631 Score E Sequences producing significant alignments: (Bits) Value seq519 98.7 2e-17 >seq519 Length=3254320 Score = 98.7 bits (108), Expect = 2e-17 Identities = 241/360 (67%), Gaps = 4/360 (1%) Strand=Plus/Plus Query 2131 TGCTGTCCTCCTCTAGCAGATCTGCCGTCTATTTGGAATTCTCCCCATTCTACGGTATCG 2190 |||| | ||| ||||||||||| || || ||||| || || | || |||||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2191 CCGTCTTTGTCGATGTACGTCTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGA 2250 || || || |||||||| | || || | ||| ||||||||| |||| || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2251 TGGAAATGTGCTGATCTGGTAGAG-GATACGAGGTCAAAGAATCGGTTGTTCGTGCATTG 2309 ||||| || | |||| ||| | |||| | |||||| |||| | || ||||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2310 GTATTTTCCTTCGAACTGAATAAGCACGTGCAGATGAGGTTGCCCATCTTCATGAGATTC 2369 | |||| ||| ||| || ||||| || |||| ||| |||| ||| | || ||| Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2370 TTTGCAAATTTTGATGTACTTCTTGTTTACCGGCGTCG-AGAGGTTTTGTAGTTGAGCGA 2428 |||||| | | | ||| | || | | || | || | |||| ||| || ||| | Sbjct 1743372 TTTGCACACTCTTATG-AATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2429 GACGCTCTTCTTTGGAAATGGAACATTGTGGATAGGTGAGGAAATAATTCTTGGCATTTA 2488 || || ||||| | | ||||||| ||| | |||||||||| ||| ||| ||||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTA 1743490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8310098197436