Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001412.1 Length=2994 Score E Sequences producing significant alignments: (Bits) Value seq1129 95.1 2e-16 seq1694 86.0 1e-13 seq519 82.4 1e-12 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 2013 CTTAAGGGCTTCATTTTCTGGTTTTTCAAGAAATTGTTGGTATGAGCTCTCAGGT---CC 2069 ||| ||||| ||||||| ||| || || || | || ||| ||| | || | || Sbjct 679428 CTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTT--TAT-AGCACGCACCTTCACC 679372 Query 2070 TGGATTGCATAATATAATGCAGGGGATACCACCTTTAATGACACGTGGTTTTCCATACTT 2129 |||||| || |||| || | |||| ||||||||| | | ||||| |||||||| Sbjct 679371 TGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTT 679312 Query 2130 TAAGTTTGTCTGCCACTCCTTTTGTGCTCCAATAAGGTGTTTCCAGTGTTTCATCTTTAA 2189 | || | ||||| || ||||| | ||||| | | |||| | || ||||||||||| Sbjct 679311 GCAATTACTTTGCCAATCTTTTTGCCC-CCAATCAAATCTTTCTAATGCTTCATCTTTAA 679253 Query 2190 GTAAGTGGGATCTACGTCATCAATGACGTTGTAT 2223 |||||||||| ||| ||||| ||||| || ||| Sbjct 679252 GTAAGTGGGAGTTACATCATCTATGACATTATAT 679219 >seq1694 Length=789422 Score = 86.0 bits (94), Expect = 1e-13 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 2068 CCTGGATTGCATAATATAATGCAGGGGATACCACCTTTAATGACACGTGGTTTTCCATAC 2127 |||||||| || |||| || | | ||| ||| |||||| | |||| |||||| Sbjct 599791 CCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATAC 599732 Query 2128 TTTAAGTTTGTCTGCCACTCCTTTTGTGCTCCAATAAGGTGTTTCCAGTGTTTCATCTTT 2187 || | | | ||||| || ||||| | ||||||| | |||| | || ||||||||| Sbjct 599731 TTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTT 599672 Query 2188 AAGTAAGTGGGATCTACGTCATCAATG 2214 |||||||||||| || | ||||||||| Sbjct 599671 AAGTAAGTGGGAGCTGCATCATCAATG 599645 >seq519 Length=3254320 Score = 82.4 bits (90), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 2072 GATTGCATAATATAATGCAGGGGATACCACCTTTAATG-ACACGTGGTTTTCCATACTTT 2130 ||| ||| |||| || | ||||| ||||||||||| | ||| | ||| | | |||| Sbjct 1742337 GATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAG-TTTCCGAAACTTG 1742395 Query 2131 AAGTTTGTCTGCCACTCCTTTTGTGCTCCAATAAGGTGTTTCCAGTGTTTC----ATCTT 2186 | || | ||||| || ||||| | ||||| | | |||||| || | | ||||| Sbjct 1742396 CAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTT 1742455 Query 2187 TAAGTAAGTGGGATCTACGTCATCAATGACGTTGTAT 2223 |||||| |||||| |||| ||||||||||| || ||| Sbjct 1742456 TAAGTATGTGGGAGCTACATCATCAATGACATTATAT 1742492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9468446014830