Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001439.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq1129 140 5e-30 seq1694 107 3e-20 seq519 107 3e-20 >seq1129 Length=1508174 Score = 140 bits (154), Expect = 5e-30 Identities = 246/352 (70%), Gaps = 10/352 (3%) Strand=Plus/Minus Query 1686 TTTTCCTCTTTGTTGAGGAAGTCTTTATAACTGGAACCCTCACCTGGATTGCACAGCACG 1745 ||||||||||| | ||||| |||||||| | | ||| ||||||||||| |||| | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1746 ATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCAG 1805 |||||||| | ||||||||| |||| || || ||||| || || || |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1806 TCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTTTAACTTCAAATAATTGGGGCTTATG 1865 || ||||| ||||||| | |||||| | ||||| | ||| || ||| |||| ||| Sbjct 679295 TCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1866 TCATCAATGACGTTGTA--TTCCACTGAGT-TGGAATAGACACGTGAATTAAAGTCCAA- 1921 ||||| ||||| || || || || | | | ||||||| | || || || || || Sbjct 679236 TCATCTATGACATTATATGTTGCA-TCATTGTGGAATACTGATTTG--TTGAAATCTAAG 679180 Query 1922 --ATGACCGCTCAAATAATTATGTGGGCCTAATGCACGAGCCCACATTGTCTTTCCAGTT 1979 ||| ||| | | |||||||| || | | || || ||| | | || || || || Sbjct 679179 TGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATT 679120 Query 1980 CGTGAATCACCTTCGACGATGATACTAATAGGTCTTTCTGGCCGCGCAGCGG 2031 || ||||| | ||| ||||| ||||||| ||||||| |||| ||| Sbjct 679119 CGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 107 bits (118), Expect = 3e-20 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 1686 TTTTCCTCTTTGTTGAGGAAGTCTTTATAACTGGAACCCTCACCTGGATTGCACAGCACG 1745 |||||||||| | |||| |||||||| | ||| ||||||||||| |||| ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1746 ATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCAG 1805 ||||||| || | | |||||||||||| | || ||||| || || | |||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1806 TCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCTTTAACTTCAAATAATTGGGGCTTATG 1865 || ||||| ||||||| | |||||| | ||||| | ||| || ||| |||| | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCA 599654 Query 1866 TCATCAATG 1874 ||||||||| Sbjct 599653 TCATCAATG 599645 Score = 80.6 bits (88), Expect = 4e-12 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1686 TTTTCCTCTTTGTTGAGGAAGTCTTTATAACTGGAACCCTCACCTGGATTGCACAGCACG 1745 ||||||||||| | | ||| ||| | || | ||| |||| | ||||||||| ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1746 ATTGATGGTATTCCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCA 1804 |||||||| || || |||||||||| ||| || || ||||| || || || |||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 1653 GCATTATGAATGGTCCAGTTGTGTAAAGCTCGGTTTTCCTCTTTGTTGAGGAAGTCTTTA 1712 ||||| || | |||| || | | |||| |||||||| || | ||||| |||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1713 TAACTGGAACCCTCACCTGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGA 1772 || | |||||||| | ||| ||||| ||||||||||| || || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1773 ACCGGCTTTCCATATTTACAGTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTC 1832 || | || | | | || || || |||||| || ||||| ||||||| | |||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1833 CAGTG----CTTTAACTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTAT 1883 || || || | ||| || || |||| || ||||||||||| || ||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATAT 1742492 Score = 91.5 bits (100), Expect = 2e-15 Identities = 247/372 (66%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 2271 TGCTGACCTCCTCTTGCAGATCTGCCGTCGACTTGGAATTGTCCCCATTCGATTGTGACT 2330 |||| || ||| || |||||||| || || | ||| || | | || || | | || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2331 CCATCTTTGTCGATGTATTCTTTGACGTCGGAACTTGATTTAGCTCCCTGAATGTTCGGA 2390 || || || ||||||||| ||| || | || ||||||||| |||| || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2391 TGGAAATGTGCTGACCTGGTTGTG-GATACCAGGTCGAACAATCTTTTATTTGTGCAGAT 2449 ||||| || | ||| | | | |||| | ||| || |||| || ||| ||||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2450 GAATTTACCTTCGAACTGAATAAGCGCATGAAGATGGGGTTCACCATTATCGTGACGTTC 2509 |||||||||| ||| || ||||| |||| | ||| ||||| || || ||| |||| Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2510 CTCACAGACCTTGATGAATTTCTTATTCGTCGTTGTA--TGAATCTTTTGAAGTTGCGAA 2567 | || || | |||||||| ||| || | ||| ||| ||||||| | || | Sbjct 1743372 TTTGCACACTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGA-GATGATGA 1743429 Query 2568 AGAGCTTCTTCTTTCGGTATAGTGCAACGAGGATAAGTGAGGAAATAGTTTTTGGACTGA 2627 ||||| || ||||| | | | || | || |||||||||||| |||||| | Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2628 ACTCTAAATCTT 2639 | |||||| ||| Sbjct 1743490 ATTCTAAACCTT 1743501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8361296338044