Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001507.1 Length=2588 Score E Sequences producing significant alignments: (Bits) Value seq1129 178 2e-41 seq519 134 2e-28 seq1694 127 3e-26 >seq1129 Length=1508174 Score = 178 bits (196), Expect = 2e-41 Identities = 277/391 (71%), Gaps = 10/391 (3%) Strand=Plus/Minus Query 1592 AATTTCGCATTATGGAAAGTCCAGTTCTTTAGTGGAGTGTTTTCCTCTTTGTCGAGGAAA 1651 |||| ||||| |||| ||| | ||||| || | | ||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1652 ACTTTATAGCTAGCACCCTCTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTA 1711 ||||||||| ||||| || || ||||| |||| | |||||| |||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1712 ATTTGAACTGGCTTTCCGTATTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGT 1771 ||| |||| || || || || || || ||| | ||||||||| ||| | ||||||| | Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAA 679276 Query 1772 TCTTTCCAATGTTTCAACTTTAGATATTGCGGTGTGACATCATCGATGACGTTATA---C 1828 |||||| |||| |||| ||||| || || || |||||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1829 TCAACCTTGTTTGAGTAAACCCTAGAATTGAGATCCAA---ATGCCCGCTCAAATAATTA 1885 || | ||| | || || | | |||| ||| || ||| ||| | | |||||| Sbjct 679215 GCATCATTG-TGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTA 679159 Query 1886 TGTGGGCCTAGTGAACGAGCCCACATAGTCTTTCCCGTCCGACTATCGCCCTCGATGATA 1945 || || | ||||| || ||| | |||| || || | ||||| ||| || ||||| Sbjct 679158 TGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATT 679099 Query 1946 ATACTAATAGGTCTCTCCGGCCGCGCAGCGG 1976 ||||| ||||||| || |||| |||| ||| Sbjct 679098 ATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 134 bits (148), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1592 AATTTCGCATTATGGAAAGTCCAGTTCTTTAGTGGAGTGTTTTCCTCTTTGTCGAGGAAA 1651 |||| ||||| || | |||| ||||| || | |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1652 ACTTTATAGCTAGCACCCTCTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTA 1711 |||||||| |||||||| | ||| ||||| |||||||| ||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1712 ATTTGAACTGGCTTTCCGTAT-TTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAG 1770 |||| ||| | |||||| | || || ||| | ||||||||| |||| ||||||| | Sbjct 1742372 ATTTAAACGAG-TTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1771 TTCTTTCCAATG----TTTCAACTTTAGATATTGCGGTGTGACATCATCGATGACGTTAT 1826 |||||||||||| | || ||||| ||| || | |||||||| ||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1827 A 1827 | Sbjct 1742491 A 1742491 >seq1694 Length=789422 Score = 127 bits (140), Expect = 3e-26 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1592 AATTTCGCATTATGGAAAGTCCAGTTCTTTAGTGGAGTGTTTTCCTCTTTGTCGAGGAAA 1651 |||| ||||| |||| ||||| ||||| || | |||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1652 ACTTTATAGCTAGCACCCTCTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTA 1711 |||||||| ||||| || || ||||| |||| |||||||| | ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1712 ATTTGAACTGGCTTTCCGTATTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGT 1771 |||||||| | || || || || || | | | ||||||||| |||| ||||||| | | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1772 TCTTTCCAATGTTTCAACTTTAGATATTGCGGTGTGACATCATCGATGACGTTAT 1826 |||||| | || |||| ||||| || || | ||||||| ||| | |||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 87.8 bits (96), Expect = 3e-14 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 1598 GCATTATGGAAAGTCCAGTTCTTTAGTGGAGTGTTTTCCTCTTTGTCGAGGAAAACTTTA 1657 |||| |||| | ||| ||||| || | ||||||||||| || | |||| || | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1658 TAGCTAGCACCCTCTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGA 1717 ||| ||||| || | ||||||||| |||||||| ||||| || |||||||||| | Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1718 ACTGGCTTTCCGTATTTACAGTTAGTCTGCCAA 1750 || || || || || || || ||| | |||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATTACTTTGCCAA 596118 Score = 78.8 bits (86), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1372 TTATCTTGAAATAGAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGC-TTGA 1430 |||||||||||||||| |||||| || ||||| ||| |||||||| | ||| || Sbjct 596571 TTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTGT-TGCACCGA 596513 Query 1431 GGCACAGTGATAGGTTCCCCTGTGCGTGAATCCATTGTTTCTGCA 1475 | |||||||| | ||||||| |||| ||||||| ||| ||||| Sbjct 596512 GCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCA 596468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8172503194552