Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001828.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq519 105 1e-19 seq1694 104 4e-19 >seq519 Length=3254320 Score = 105 bits (116), Expect = 1e-19 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 1520 AGGAAGTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCG 1579 ||||| ||||||||| |||||||||| ||| ||| | ||||||| |||||| || Sbjct 1742306 AGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCA 1742365 Query 1580 CCTTTAATTTGAACTGGCTTACCGTACTTGCAGTTTGATTGCCAATCTCTCTGGGCCCCC 1639 |||||||||| ||| | || | ||||||| || |||||||||| | || |||| Sbjct 1742366 CCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCA 1742425 Query 1640 AGCAATTCTTTCCAGTG----CTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGAC 1695 | |||||||||||| || || | ||||| || || || | ||||||||||| Sbjct 1742426 ATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGAC 1742485 Query 1696 GTTATA 1701 ||||| Sbjct 1742486 ATTATA 1742491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 236/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 2089 TTGTTGACCTCCCCTAGCAGACCTACCGTCGATCTGGAATTCTCCCCATTCCAGTGTGTC 2148 ||| | || |||||||||||| || || || || || || || | || || | ||| Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTC 1743191 Query 2149 TCCGTCCTTGGTAATGTATGTTTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGG 2208 ||| ||||| ||||||| ||| || | ||| | ||||||| || | || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2209 ATGGAAATGTGCTGACCTGGTTGGGGAGA-CCACATCGAAGAATCTGTTATTCGTGCAGT 2267 |||||| || | || ||| ||| || | || || |||| | ||| ||||| Sbjct 1743252 ATGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2268 TGTATTTGCCTTCGAATTGGACAAGCACGTGGAGATGAGGTTCCCCATTTTCATGCAACT 2327 | |||| ||| ||| |||| ||| || || | ||| |||||||| || || | | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2328 CTCTGCAGA-TCTTGATGAATTTCTTGTCTACTGGTGT-GTTTAGGTTTTGTATTTGGGA 2385 || |||| | |||| |||||||| | | | | | || ||| ||| ||| | || Sbjct 1743371 CTTTGCACACTCTT-ATGAATTT-TAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATG 1743428 Query 2386 AAGTGCTTCTTCTTTACTAAGGGAACACTGTGGATACGTGAGGAAATAATTTTTG 2440 ||| || || ||||| | |||||||| ||| | |||||||||| ||||||| Sbjct 1743429 AAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTG 1743483 >seq1694 Length=789422 Score = 104 bits (114), Expect = 4e-19 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1521 GGAAGTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCGC 1580 |||| ||||||||| ||||| ||||| ||||| || | ||||||| || ||| | | Sbjct 599817 GGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACAC 599758 Query 1581 CTTTAATTTGAACTGGCTTACCGTACTTGCAGTTTGATTGCCAATCTCTCTGGGCCCCCA 1640 |||||||||||| | || || |||||||| | |||||||||| | || |||| | Sbjct 599757 ATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAA 599698 Query 1641 GCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTAT 1700 ||||||||| | ||||| | ||||| ||| || || ||||||||| | |||| Sbjct 599697 TAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201302148644