Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001928.2 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq1129 127 3e-26 seq519 125 1e-25 seq1694 120 5e-24 >seq1129 Length=1508174 Score = 127 bits (140), Expect = 3e-26 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 1673 ATTTTCCTCTTTGTCCAGGTACTCTTTATAGCTGGAACCCTCACCAGGATTGCAAAGCAC 1732 |||||||||||| || ||| | |||||||||| | ||| ||||| ||||| || | | Sbjct 679416 ATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAA 679357 Query 1733 GATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTACTTGCAATTTGACTGCCA 1792 ||||| ||||| ||||||||| |||| || || || ||||||||||| ||||| Sbjct 679356 GATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCA 679297 Query 1793 GTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT-AGATAGTGCGGTGCGA 1851 ||||||| | |||| | ||| |||||| | ||||| | |||| || |||| || | | Sbjct 679296 ATCTTTTT-GCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTA 679239 Query 1852 CGTCATCAATGACGTTATA 1870 | ||||| ||||| ||||| Sbjct 679238 CATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 1665 AGACCTGTATTTTCCTCTTTGTCCAGGTACTCTTTATAGCTGGAACCCTCACCAGGATTG 1724 ||| || ||||||||| || || ||| | ||||||||| | |||||||| ||| | Sbjct 1742282 AGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAG 1742341 Query 1725 CAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTACTTGCAATTT 1784 || | ||||||| |||||| || |||||||||| ||| | || | |||||||||| Sbjct 1742342 CACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTA 1742401 Query 1785 GACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTG----CTTTAGCTTTAGATA 1840 ||||| |||||||| |||| | |||||||||||| || || | ||||| || Sbjct 1742402 CTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTA 1742461 Query 1841 -GTGCGGTGCGACGTCATCAATGACGTTATA 1870 ||| || || || ||||||||||| ||||| Sbjct 1742462 TGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1673 ATTTTCCTCTTTGTCCAGGTACTCTTTATAGCTGGAACCCTCACCAGGATTGCAAAGCAC 1732 ||||||||||| ||| || | ||||||||| | ||| ||||| ||||| || | || Sbjct 599834 ATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATAC 599775 Query 1733 GATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTACTTGCAATTTGACTGCCA 1792 ||||| || ||| | | |||||||||||| | || || |||||||||| ||||| Sbjct 599774 GATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCA 599715 Query 1793 GTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT-AGATAGTGCGGTGCGA 1851 |||||||| |||| | ||||||||| | ||||| | |||| || |||| || || Sbjct 599714 ATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTG 599656 Query 1852 CGTCATCAATGACGTTAT 1869 | ||||||||| | |||| Sbjct 599655 CATCATCAATGTCATTAT 599638 Score = 87.8 bits (96), Expect = 3e-14 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1673 ATTTTCCTCTTTGTCCAGGTACTCTTTATAGCTGGAACCCTCACCAGGATTGCAAAGCAC 1732 |||||||||||| |||| | | ||| | ||| | ||| |||| ||||||| | || Sbjct 596238 ATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATAC 596179 Query 1733 GATTGCTGGGATTCCTCCTTTAATTTGAACCGGCTTGCCGTACTTGCAATT 1783 ||||| |||||| || |||||||||| ||| || || || ||||||||||| Sbjct 596178 GATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313298081224