Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001931.1 Length=2615 Score E Sequences producing significant alignments: (Bits) Value seq1129 163 5e-37 seq519 150 3e-33 seq1694 149 1e-32 >seq1129 Length=1508174 Score = 163 bits (180), Expect = 5e-37 Identities = 274/388 (71%), Gaps = 14/388 (4%) Strand=Plus/Minus Query 1620 TGCATTCTTCAACGTCCAATTCCTTAGCGCTGTATTTTCCTCTTTGTTTAGGAAATCTTT 1679 |||||| | | |||| ||||| | || || |||||||||||| | |||||||||||| Sbjct 679449 TGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTT 679390 Query 1680 ATAGCTGGCACCCTCACCAGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTG 1739 ||||| ||||| ||||| ||||| || | | ||||||||||| ||||||||| | Sbjct 679389 ATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAG 679330 Query 1740 AACAGGCTTGCCGTACTTGCAATTTGACTGCCAATTCTTTTGGGCCCCAATCAATTCCTT 1799 ||| || || || ||||||||||| |||||| |||||| | |||||||||| || || Sbjct 679329 AACGGGTTTCCCATACTTGCAATTACTTTGCCAA-TCTTTTTGCCCCCAATCAAATCTTT 679271 Query 1800 CCAGTGCTTTAACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTATACTCCACTTC 1859 | | ||||| | ||||| ||| || | || ||||| ||||| ||||| | || Sbjct 679270 CTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATC 679211 Query 1860 GTCTGT-GAACACT--TTGGAATTGAAGTCTA---GGTGTCCACTTAAATAATTATGTGG 1913 | ||| ||| ||| || | ||||| |||| | || || | | |||||||| | Sbjct 679210 AT-TGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACG 679154 Query 1914 GCCTAGTGCTCGAGCCCACATCGTCTTCCCTGTTCTCGAAT--CACCTTCTACTATGAGA 1971 | | |||| || ||| | | || || ||| | |||| | ||||| | || | | Sbjct 679153 GTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT--TCGACTTGGGCCTTCAATGATTATA 679096 Query 1972 CTTACTGGTCTTTCTGGCCGCGCAGCGG 1999 ||| ||||| ||||||| |||| ||| Sbjct 679095 CTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 150 bits (166), Expect = 3e-33 Identities = 174/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1621 GCATTCTTCAACGTCCAATTCCTTAGCGCTGTATTTTCCTCTTTGTTTAGGAAATCTTTA 1680 ||||| | | | |||||||| | || ||| ||||||||| || | ||||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1681 TAGCTGGCACCCTCACCAGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1740 ||| |||||||||| ||| ||| | |||||||||||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1741 ACAGGCTTGCCGTACTTGCAATTTGACTGCCAATTCTTTTGGGCCCCAATCAATTCCTTC 1800 || | || | |||||||||| ||||||| ||||| ||||||||||||| ||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1801 CAGTG----CTTTAACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTATA 1850 || || || | ||||| || || || || ||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 104 bits (114), Expect = 4e-19 Identities = 233/345 (68%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 2239 TGCTGACCTCCTCTAGCAGATCTGCCGTCGATTTGAAACACTCCCCATTCGACGGTGTCG 2298 |||| || ||| ||||||||||| || || |||||||| | | || || ||| ||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2299 CCGTCTTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGA 2358 || || || |||||||| || || || | ||| | ||||||| |||| || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2359 TGGAAATGTGCTGACCTGGTTGGGGAAACCAGATCGAAGAATCTGTTATTCGTGCATTGG 2418 ||||| || | ||| | ||| | | || || |||| | ||| ||||| | Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAG 1743312 Query 2419 TATTTACCTTCGAACTGGATGAGGACGTGCAGATGAGGTTCCCCATCTTCGTGTAATTCC 2478 |||||||| ||| ||||| || || |||| ||| |||||||| | ||||| ||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCT 1743372 Query 2479 CTGCA-AATCTTGATGAATTTCTTGTTAACTGGAGT-TTTTAGGTTTTGGATTTGGGAAA 2536 |||| | |||| |||||||| | | | | | || || ||| ||| || || || Sbjct 1743373 TTGCACACTCTT-ATGAATTT-TAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2537 GTGCTTCCTCTTTAGTAAGAGAGCACTGTGGATATGTGAGGAAAT 2581 | || || ||||| || || || || ||| | |||||||||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAAT 1743475 >seq1694 Length=789422 Score = 149 bits (164), Expect = 1e-32 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 1620 TGCATTCTTCAACGTCCAATTCCTTAGCGCTGTATTTTCCTCTTTGTTTAGGAAATCTTT 1679 |||||| | | |||||||||| | || || ||||||||||| | |||||||||| Sbjct 599867 TGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTT 599808 Query 1680 ATAGCTGGCACCCTCACCAGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTG 1739 |||| ||||| ||||| ||||| || | |||||||||| ||| | | ||||||||| Sbjct 599807 ATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTG 599748 Query 1740 AACAGGCTTGCCGTACTTGCAATTTGACTGCCAATTCTTTTGGGCCCCAATCAATTCCTT 1799 |||| | || || |||||||||| ||||||| ||||| ||||||| ||||| || Sbjct 599747 AACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTT 599688 Query 1800 CCAGTGCTTTAACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTAT 1849 | | ||||| | ||||| ||| || || | ||||||||| | |||| Sbjct 599687 CTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 102 bits (112), Expect = 1e-18 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 1635 CCAATTCCTTAGCGCTGTATTTTCCTCTTTGTTTAGGAAATCTTTATAGCTGGCACCCTC 1694 ||||||| | || || |||||||||||| | | ||||||| | ||| ||||| || Sbjct 596256 CCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTC 596197 Query 1695 ACCAGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCTTGCCGTA 1754 || ||||||| | |||||||||||||| || |||||||||| ||| || || || || Sbjct 596196 ACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATA 596137 Query 1755 CTTGCAATT 1763 ||||||||| Sbjct 596136 CTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8258900056828