Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001932.1 Length=2815 Score E Sequences producing significant alignments: (Bits) Value seq3069 120 5e-24 seq519 111 3e-21 seq2957 96.9 6e-17 seq1694 93.3 8e-16 >seq3069 Length=10854949 Score = 120 bits (132), Expect = 5e-24 Identities = 190/268 (71%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 1459 TAAGGTCGTCCAGACCTTGAAATCCATCCA-GCATTGATGTAGTCCCAACGCTTTCCTCA 1517 ||| |||||||||| ||||||| ||||| || || || | | ||| |||||||| | Sbjct 3754356 TAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTC-TGAAATTTCAAGGCTTTCCTGA 3754414 Query 1518 GGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCCTGGT--TCATTACGAACGGTCT 1575 ||||| |||||| ||||||||| ||| ||||| |||| | ||| || ||||| Sbjct 3754415 GGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTA--AATGGTCT 3754472 Query 1576 GTTGTCGTGTTGAATGATCTTGAAATAGAGGGGATTTGGTACCTCCCAGATAAAGACGCC 1635 | | |||| | | ||||||||| |||||||||||||| || || ||| | ||| | Sbjct 3754473 CCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTC 3754532 Query 1636 ATTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGT 1695 ||| | || ||| | ||||| || ||| ||||| ||| ||| ||| | ||| | Sbjct 3754533 ATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAAT 3754592 Query 1696 TAATGTGGACGTAGTACGAGCACCCGCA 1723 |||||| |||||| | ||| || || Sbjct 3754593 TAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 237/345 (69%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 2443 CCTCTGGCTGATCGTCCATCGATCTGAAA-TGTTCCCCATCTCCAAGTA-TCACCGTCCT 2500 || || || |||| |||||| || ||||| | || | |||| | ||| || || |||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC--GTAGTCTCCCTCCT 1743199 Query 2501 TGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAAT 2560 | |||||||| || || || | ||| | ||||||| |||| ||| ||||||| | Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2561 GTGCTGACCTGGTTGG-TGATACCAGGTCGAAGAATCGCTGATTCTGGCATTTGTATTTG 2619 | | ||| | || ||||| | ||| || |||| ||||| ||| | |||| Sbjct 1743260 GAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTA 1743318 Query 2620 CCTTCGAACTGGATGAGCACGTGCAGATGAGGCTCCCCATTCTCATGTAGCTCCCTGCAT 2679 ||| ||| ||||| || || |||| ||| || ||||| || ||||| || |||| Sbjct 1743319 CCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCAC 1743378 Query 2680 ATTTTGATGAATTTAGGGTTTGTAGG-TGTTTGAAAGTTCCTAATTTGAGAGAGAGCCTC 2738 | | | |||||||| | |||||||| | |||| || | | ||| ||||| || Sbjct 1743379 ACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTT-TGAGATGATGAAGAGCATC 1743437 Query 2739 TTCTTTAGTTAAGGAGCATCGAGGGTAAGTGAGGAAATAGTTTTT 2783 ||||| || | ||| |||| ||| |||||||||||| ||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTT 1743482 Score = 98.7 bits (108), Expect = 2e-17 Identities = 185/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 1459 TAAGGTCGTCCAGACCTTGAAATCCATCCA-GCATTGATGTAGTCCCAACGCTTTCCTCA 1517 ||| |||||||||| ||||||| ||| | || || ||| | | | | |||||| | Sbjct 1741825 TAATGTCGTCCAGATCTTGAAAAATATCTATGCCTT-ATGAAATTGTAGGGTTTTCCTGA 1741883 Query 1518 GGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCCTGGTTCATTACGAACGGTCTGT 1577 | |||| |||||| ||||||||| ||| ||||| ||||| | || |||| Sbjct 1741884 GATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAATTGTCTCC 1741943 Query 1578 TGTCGTGTTGAATGATCTTGAAATAGAGGGGATTTGGTACCTCCCAGATAAAGACGCCAT 1637 | | || | | | |||||||||||||||| |||||||| ||||| | | || |||| Sbjct 1741944 TCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCAT 1742003 Query 1638 TCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTA 1697 | | |||||| ||||| ||||||| ||| | ||||||| ||| |||||| Sbjct 1742004 TGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTA 1742062 Query 1698 ATGTGGACGTAGTACGAGCACCCGCAGT 1725 ||||| ||| || ||| || |||| Sbjct 1742063 ATGTGTTGGTAATATATGCAACCACAGT 1742090 Score = 91.5 bits (100), Expect = 3e-15 Identities = 229/337 (68%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 2452 GATCGTCCATCGATCTGAAA-TGTTCCCCATCTCCAAGTA-TCACCGTCCTTGTCGATGT 2509 |||| |||||| || ||||| | |||| |||| || || || || ||||| || |||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACA--TAGTCTCCCTCCTTTTCAATGT 1749023 Query 2510 AGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGA 2567 | || || || || || | |||||||| |||| ||||||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2568 CCTGGTTGGTGATACCAGGTCGAAGAATCGCTGATTCTGGCATTTGTATTTGCCTTCGAA 2627 || || | | | | |||||| || | ||||| ||| | |||| ||| ||| Sbjct 1749084 TCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2628 CTGGATGAGCACGTGCAGATGAGGCTCCCCATTCTCATGTAGCTCCCTGCATATTTTGAT 2687 || || || || |||| ||| || |||| | || ||||| || ||||| | ||| || Sbjct 1749143 CTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2688 GAATTTAGGGTTTGTA-GGTGTTTGAAAGTTCCTAATTTGAGAGAGAGCCTCTTCTTTAG 2746 ||||||| | |||||| ||| ||| | ||| | | ||| ||| | || ||||| | Sbjct 1749201 GAATTTAAGATTTGTAGGGTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTTG 1749259 Query 2747 TTAAGGAGCATCGAGGGTAAGTGAGGAAATAGTTTTT 2783 | | | |||| ||| ||||||| ||||| ||||| Sbjct 1749260 TGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTT 1749296 >seq2957 Length=4215098 Score = 96.9 bits (106), Expect = 6e-17 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 1505 AACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGGACGGTTATTATGTCCTGGTTCATT 1564 || |||||| | ||||||| ||||||| ||||||||| | ||| |||| | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1565 ACGAACGGTCTGTTGTCGTGTTGAATGATCTTGAAATAGAGGGGATTTGGTACCTCCCAG 1624 ||| | ||| | | |||| | |||||||||||| || |||||||||| ||| || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1625 ATAAAGACGCCATTCATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATG 1684 || | || |||| | |||||| ||| ||| | | | | ||||| ||||||| Sbjct 1238869 GTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATT 1238928 Query 1685 GTTGTGGCAGTTAATGTGGACGTAGTA-CGAGCACCCGCAGTTGAGAT--CTACCCTTT 1740 ||| |||||||||| | ||| || | ||| || || || |||| |||| |||| Sbjct 1238929 GTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCACTACGCTTT 1238987 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 8e-16 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1520 TTGTGGTTGAACCGTATCTGGACGGTTATTATGTCCTGGTTCATTACGAACGGTCTGTTG 1579 |||| ||||||| |||| |||| ||| ||||| ||||| | ||| ||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1580 TCGTGTTGAATGATCTTGAAATAGAGGGGATTTGGTACCTCCCAGATAAAGACGCCATTC 1639 | |||| | | |||||||||||||| |||||||||| ||||| | | |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1640 ATCGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTAAT 1699 | | |||| |||||| ||||||| |||| ||||||| ||| ||| ||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAAT 596462 Query 1700 GTGGACGTAGTACGAGCACCCGCA 1723 || ||| || | ||| || || Sbjct 596461 ATGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8895667428600